BtaEX6104525 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008274 | MUC5B
Description
mucin 5B, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:HGNC:7516]
Coordinates
chr29:51374283-51375506:-
Coord C1 exon
chr29:51375251-51375506
Coord A exon
chr29:51374729-51374915
Coord C2 exon
chr29:51374283-51374511
Length
187 bp
Sequences
Splice sites
3' ss Seq
TCCCCCGGTCACACCCCCAGATC
3' ss Score
8.17
5' ss Seq
GCGGTGAGC
5' ss Score
8.02
Exon sequences
Seq C1 exon
GCCTGCAGGTGTCTGCAGCGGCTGGGGGGACACCCACTACGAAACCTTTGATGGCACCTCCTACTCCTTCTGGGACAACTGCACCTATGTCCTCATGCGCGAGATCCAGCCACGCCATGGCAACCTCCGCATCCTGCTGCACAACCGCTTCTGTGAGGCCACCGCCCACTGCCCCCGTGCCCTAAGCATCCACTACCAGTCCGTGGACATCGTCCTCTCCACCACCAGCAGCGCCGCTGGGCAGGAGGAAAGCCTG
Seq A exon
ATCCTGCTGGACCAAACTCGGATGAGGCAGAGCTTCAGCAAGAACGGCGTGATCGTGACCCTGACCGGGGCCACCGGGATGCGCGTCGATATTCCCGCCGTCGGTGTCGGCATCACCTTCAACGGGCGGGTCTTCCAGGCCCGGCTCTCCTACAGCCGTTTCAGTCACAACACCGAGGGCCAGTGCG
Seq C2 exon
GCACCTGCACCAACAACCGCCGGGATGAATGTCGCCGGCCAGACGGCACCACGGCCCGCACCTGCCGGGACATGGCCCGGTCCTGGCTGGTCTCCAACAGCAGCGTGGAGGGCTGCGGGGTGCCCACCGGCCTGCCCCCAACCACCAGCCCCCTCTTGCCGGAAACCAGCACGCCCGCCATCCACCCGTCGTGCCCCCCAGAGCCCCTCTGCGAGCTGATGCTGAGCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008274-'62-64,'62-63,63-64=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.234
Domain overlap (PFAM):
C1:
PF0009420=VWD=PU(50.0=93.0)
A:
PF0009420=VWD=FE(38.8=100)
C2:
PF0009420=VWD=PD(10.0=20.8),PF087426=C8=PU(17.3=16.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGAAACCTTTGATGGCACCT
R:
ATTCATCCCGGCGGTTGTTG
Band lengths:
248-435
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]