BtaEX6106623 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003572 | F11
Description
Bos taurus coagulation factor XI (F11), mRNA. [Source:RefSeq mRNA;Acc:NM_001008665]
Coordinates
chr27:15362156-15362717:+
Coord C1 exon
chr27:15362156-15362265
Coord A exon
chr27:15362359-15362521
Coord C2 exon
chr27:15362611-15362717
Length
163 bp
Sequences
Splice sites
3' ss Seq
TATGTGCTTCTGCTGTGCAGTGT
3' ss Score
6.42
5' ss Seq
GAAGTAAGA
5' ss Score
6.42
Exon sequences
Seq C1 exon
AAATCTGTGTCTCCTTAAAACATCTTCAAGTGGATTGCCAAGCGCACGCTTTAGAAAGAACAGAGCTTTTTCTGGTTTTAGTCTACAACACTGCCAGCACAGTGTCCCAG
Seq A exon
TGTTCTGCCATTCTTCATTCTATCGCAACACTGATTTCTTGGGAGAAGAACTGGACATCGTAGACGCGGACAGCCACGAAGCCTGCCAGAAAACATGTACCAACAGCATCCGCTGCCAGTTCTTTACCTATTCTCCATCTCAAGAATCGTGCAACGGAGGGAA
Seq C2 exon
GGGTAAATGCTACTTAAAACTTTCTGCAAATGGATCTCCAACTAAAATACTTCATGGGACAGGAAGCATCTCTGGATACACGTTAAGGTTATGTAAAATGGATAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003572-'8-9,'8-8,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0002421=PAN_1=PD(36.9=81.6)
A:
PF0002421=PAN_1=PU(61.9=94.5)
C2:
PF0002421=PAN_1=PD(36.9=83.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGTGTCTCCTTAAAACATCTTCA
R:
ATCCATTTTACATAACCTTAACGTGT
Band lengths:
210-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]