BtaEX6109089 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N096]
Coordinates
chr25:19635771-19659780:+
Coord C1 exon
chr25:19635771-19635973
Coord A exon
chr25:19647550-19647691
Coord C2 exon
chr25:19659524-19659780
Length
142 bp
Sequences
Splice sites
3' ss Seq
TTTTCTGCTGCTACTTCTAGGTA
3' ss Score
9.66
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
GTAAACTAATATATTTTCTCTCAGAAGGGATTATCATATGTTTTTATTTAAGTGAACAATTTTACTTCTCTGTAGTTCAAGGCTTTTCTTCAGAAATTGAGTTTGAGAAGTACATTAAGTATGACTATCGAGCTCATAAAGTGCTGGCTGCCATTGTTTTTGACTGTGACTTCAAAAATAGGCATGATCCATTGCCACTTCAG
Seq A exon
GTAAAATACCATCTGCGTTTTGCTGCTATACAGAGGACTATCATATGGCCAGATGAGACGGGCTGGAAAACAACCTTACTTTTCCCTAATCAGCCCTCTGTAGGACCCAGGAATCCAGGTCATCAGGATGGAGGAGGTCCTG
Seq C2 exon
GGTACATCAGAGAAGGATTCCTGGCTATACAGCATGCCTTAGATAAGGCCATCATTCTATATCATGAGAGCAGTGCTAGACAGTTGTTTGATGATATCAGCATCCTTGTACAGAGATTTCCATATCCAGCTTATCCTGATGACGGATTACTTTTGCTCACTGGTAGTTTCCTTCCTCTGATGTTCATACTCATGTTCTCTCCAACTGTACTTTCCATCATTCGATCTATTGTATGGGAAAAGGAAAAAAGATTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000035915-'6-8,'6-7,7-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.188 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF126982=ABC2_membrane_3=FE(13.4=100)
C2:
PF126982=ABC2_membrane_3=PU(30.9=93.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCATAAAGTGCTGGCTGCCA
R:
GAAGGAAACTACCAGTGAGCA
Band lengths:
245-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]