BtaEX6109093 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N096]
Coordinates
chr25:19618896-19633814:+
Coord C1 exon
chr25:19618896-19618948
Coord A exon
chr25:19633318-19633381
Coord C2 exon
chr25:19633709-19633814
Length
64 bp
Sequences
Splice sites
3' ss Seq
CGAACATACACTTTTTGTAGAAG
3' ss Score
4.25
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
GGAGCAGCTTCTGAGGTAAAGGTGGAGGTGGTGGCGGTTGAGAGGCTTGAACG
Seq A exon
AAGAATGAATTTATTGACACTCAACCAGTTTGCAGTGCTTCTCTGGAAAAATTTCACCTTGAAG
Seq C2 exon
AGGAGGCAGTTCTTTAATTTAATATTGGAAGTCCTAACTGCATTGGCGTTTCCAATGATGCTTTTGCTCTTACGTGCTGTTATTCATATAACGGTTGCTGGACCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000035915-'0-2,'0-1,1-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF126982=ABC2_membrane_3=PU(13.4=71.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTAAAGGTGGAGGTGGTGG
R:
AGGTCCAGCAACCGTTATATGA
Band lengths:
145-209
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]