BtaEX6109900 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000037397 | PRSS36
Description
protease, serine, 36 [Source:HGNC Symbol;Acc:HGNC:26906]
Coordinates
chr25:27495130-27496220:-
Coord C1 exon
chr25:27495971-27496220
Coord A exon
chr25:27495732-27495861
Coord C2 exon
chr25:27495130-27495386
Length
130 bp
Sequences
Splice sites
3' ss Seq
TCAGGCCTCTCACCCCTCAGAGT
3' ss Score
7.77
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
GGAGACTCTGGGGGACCCCTGGTCTGCAAGGAAGGTGGTCGATGGTTCCAGGCAGGAATCACCAGCTTTGGCTTTGGCTGTGGACGGAGGAACCGCCCCGGAGTCTTCACTGCTGTGGCTCCCTATGAGGCATGGATAAGGGAACAGGTGTCAGGCTCAGAGCCTGGGCCTGCCTTCCCCACCCAGTCCCCGGAGGCCCAGTCAGGCCTCCCCGAGCCCATGAATGAGAATTGCACCATTGCCCTGCCAG
Seq A exon
AGTGTGGAAGAGCCCCAAGGCCAGGGGCCTGGCCCTGGGAAGCCCAGGTGATGGTCCCAGGATCCAGACCCTGCTATGGGGCACTGGTGTCTGAAAGCTGGGTCTTGGCACCTGCCAGTTGCTTTCCAGG
Seq C2 exon
TCACATCAGCTCAGCGCGCCCGCCCAGCGACCTGGACTACTGGCGCGTGCAACTGCCCTCGCGCCCGCGCGCGGAGCAGGTGGCGCGCCTCGTGCCGCACGAGAACGCCTCGTGGGACGACGCCTCGAACCTGGCGCTGCTGCAGCTGCGTGCGCCCGTGAACCTGAGCGCGGCCCCGCGGCCAGTGTGTCTACCCCACCCAGAACACTATTTCCTGCCAGGGAGCCGCTGCCGCCTGGCTCGCTGGGGCCGCGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000037397-'6-8,'6-7,7-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.310 A=0.045 C2=0.103
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PD(18.8=53.6),PF0008921=Trypsin=PU(0.1=0.0)
A:
PF0008921=Trypsin=PU(29.7=97.7)
C2:
PF0008921=Trypsin=FE(59.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGAGCCCATGAATGAGAAT
R:
AGTGTTCTGGGTGGGGTAGAC
Band lengths:
249-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]