BtaINT0000246 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MK50]
Coordinates
chr11:103253147-103253969:+
Coord C1 exon
chr11:103253147-103253257
Coord A exon
chr11:103253258-103253867
Coord C2 exon
chr11:103253868-103253969
Length
610 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGG
5' ss Score
7.65
3' ss Seq
ACCGGGCACCTGGCCTGCAGGTA
3' ss Score
7.25
Exon sequences
Seq C1 exon
ATGGCGGCAAGAAGCAAGTGCACATTCTGGAACTGCCCGTTGAGGGCCACTACATCCTTTACTGCGAAGGCCAGCGCCAGGGGAAGTCGTTCCACGTGGGGAAGCTCATAG
Seq A exon
GTGAGGCTCCGCCCTCCTGCCCTCAGATCCCCGTGTCCTGACCCGCCCCAAGGTCTCTGCCTCTAGAAGCCAGAGGAACCGCACCGGTCACTCCTGTTTCCAGAATACAGACCACATGGTCCGTGTGCGCCCAGCACAGTTTACGGCCCGGGCAGCCAGTCCAGGCTCCTTCTGGGACTTGACCACTCCCAGGGGTCACTGCATATGCAGAGTCCCGCTTCCTGGGGTCTCAGGCCAGGGTTTGGTCAGCGTGGGGGAGATAGGAGGCGCTGATGGAGGAATTCTTGGGGCAGGGACCCTCACGGGGGGTGAAGTTCAGGGTTCTCTGGTCAGAGGCAGCGCAGTTCCTCTGGGAGAGAAGCCCTTCCAGGTCAGGGGTCTGACCCTGCAGGTGGCTCTGGGATCCAGCCTGGGTCCCCCCGGAACCCCCAGGGACTCGGGTGTCCCCCGGGGCTTCCCCACCTCCTTCCCCGGGACCTGTCGGCTGGGAGGGGCCCATCTCCTCCGCACCTGCTCGGCATCCACCCCAGACTGAGCCCTCCTGCCCTGCGCCCTCCCCGGGAGCTGGGACGGACCCCGAGGCCTGACTCACCGGGCACCTGGCCTGCAG
Seq C2 exon
GTAGGAATCCCGACGTGAACCCAGAGGCCCTGGAGGCTTTTAAGAAATTCGTCCAGCGCAAGGGCTTTTCCCTGGAGGACGTCTTCACACCTGAGCAGACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000893:ENSBTAT00000032610:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.211 A=NA C2=0.114
Domain overlap (PFAM):
C1:
PF0006118=Lipocalin=FE(26.6=100)
A:
NA
C2:
PF0006118=Lipocalin=FE(24.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAGAAGCAAGTGCACATTCT
R:
CGTCTGCTCAGGTGTGAAGAC
Band lengths:
206-816
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development