BtaINT0000323 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G3X6I9]
Coordinates
chr23:27170709-27171160:-
Coord C1 exon
chr23:27171074-27171160
Coord A exon
chr23:27170910-27171073
Coord C2 exon
chr23:27170709-27170909
Length
164 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGA
5' ss Score
6.03
3' ss Seq
GCTGGTCCTCCCCTCCCCAGGAG
3' ss Score
9.68
Exon sequences
Seq C1 exon
TTCTTCCCCAACCCTGGGCTCTGGAGGCTGAAGCAGGCCATAGAGAACAGGGACCACATGGTGGAGAAGCAGCTGACGCGCCACAAG
Seq A exon
GTGGGAATCGTGCGTGGACCGGGGTCCTCCTCGGTTGGCAGCGGTGACGCTACTGGCCAGAGCCAGGCAGCTTCTGGGCCATCCCTGCGGTCCTGGACCCATGGCACCCTCTAAACACTCTCCCCAAGCCAGGCACTCAGGCCAGCTGGTCCTCCCCTCCCCAG
Seq C2 exon
GAGAGCATGGTGGCCGGCCAGTGGAGGGATATGACGGACTACATGCTCCAGGGGGTAGGGAGGCAAAGAGTAGAAGAGGGCCCGGGACAGCTCCTGGAAGGACACGTGCACATGTCTGTGGTGGACCTTTTCATCGGGGGCACTGAAACCACGGCGAGCACCCTCTCCTGGGCTGTGGCGTTCCTACTTCACCACCCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001443:ENSBTAT00000007353:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.069 A=NA C2=0.030
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(8.8=100)
A:
NA
C2:
PF0006717=p450=FE(20.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCCATAGAGAACAGGGACC
R:
GGTGAAGTAGGAACGCCACAG
Band lengths:
246-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]