BtaINT0000470 @ bosTau6
Intron Retention
Description
NA
Coordinates
chr18:45830539-45831005:-
Coord C1 exon
chr18:45830892-45831005
Coord A exon
chr18:45830890-45830891
Coord C2 exon
chr18:45830539-45830889
Length
2 bp
Sequences
Splice sites
5' ss Seq
TCCACCTGA
5' ss Score
-24.26
3' ss Seq
GTAAAAAAATACATTTCCACCTG
3' ss Score
-4.91
Exon sequences
Seq C1 exon
CTGGCTCCCATCATCTGGGACAGGGCTTTCAACACTGACATCCTGAATGAACAGTTCCAGCTTCAGAATATCACCATTGGATTAACTGTGTTTGTTGTAAAAAAATACATTTCC
Seq A exon
AC
Seq C2 exon
CTGAAGCTGTTCCTGAAGACGGCAGAGATGTACTTCATGGTGGGACACAGGGTGAACTACTATATCTTCACTCACTGGCCAAACTATGTTCCTCGCATTCCCCTTCAGAAAGGACGGCAGATTGTCATTCTCAAGGTCCAGAGCTGTGCCAACTGGCAGGAGATCTCTATGCACCGTATGGAGGGGATCAGAAATTTTACTGAGCAGCGCTTCTACGAGGAGGTGAATTACCTTATATGTGCAAATGTGGACATGAAGTTTAGTGATCATGTGGGCATGGAGATCCTCTCCTCCTTGTTTGGCACCCTCCATTCTGACTTCTATGAGCTTAGTCAAGAAAATTTCCCCTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002380:ENSBTAT00000003079:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGAATGAACAGTTCCAGCT
R:
TCTCTGCCGTCTTCAGGAACA
Band lengths:
102-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development