BtaINT0000514 @ bosTau6
Intron Retention
Description
Bos taurus fidgetin-like 2 (FIGNL2), mRNA. [Source:RefSeq mRNA;Acc:NM_001214905]
Coordinates
chr5:28197781-28199954:+
Coord C1 exon
chr5:28197781-28197805
Coord A exon
chr5:28197806-28197972
Coord C2 exon
chr5:28197973-28199954
Length
167 bp
Sequences
Splice sites
5' ss Seq
ACGGTGATT
5' ss Score
4.54
3' ss Seq
GCCGCTTCTCTTGCCTGCAGCTC
3' ss Score
10.14
Exon sequences
Seq C1 exon
TTAATTGTGGGACAAGACAAATACG
Seq A exon
GTGATTTTGGTGCCTGAAGATGGCCCGGGTAGGGTGGAAAGCTGTGGGTAGATGCGGGAAAACCAGCCTGTCCCAAGCTATGGTTTAAGAAGGTCCGCCTGCGGCTGGCAGTCGGTGGGTCCTTAGAGGCTCTTCAGGATCTCACTAGCCGCTTCTCTTGCCTGCAG
Seq C2 exon
CTCTGTCGAAGATGCACTGGACACCGGAACACGCCCAGCCCCTCAACCAGTGGCCAGAGCAGCACCTGGACGTCTCCTCCACCACCCCGTCGCCGGCCCACAAGTTGGAGTTGCCCCCTGGGGGTCGCCAGCGCTGCCACTATGCTTGGGCACACGACGACATCTCTGCCCTCACGGCCTCCAACCTCCTCAAGCGCTACGCCGAGAAGTACTCGGGGGTCCTGGACTCGCCCTACGAGCGCCCCACCCTGGGCGGCTACGGCGACGCCGCCTTCCTCAACGGCGCCAAGGGGGACCCCGAACCCTGGCCGGGACCAGAGACTCCTTACCCCTTGGCCTCGCTCCACGAGGGCCTCCCGGGAACCAAGTCGGGCGGTGGGGGCGGCTCCGGGGGTCTCGGCGGTTCCCCGGTTTTAGCCGGAAACCTGCCTGAACCCCTCTACGCCGGCAACGCGTGCGGGGGCCCGTCGGCGGCGCCGGAGTACGCGGCGGGCTACGGAGCAGGGTACCTGGCGCCGGGTTACTGCGCGCAGACAGGCGCCGCGCTGCCCCCGCCGCCCCCGGCCGCGCTCCTGCAGCCCCCGCCCCCGCCGGGCTACGGCCCCTCTGGGTCTCTGTACAACTACCCCGCAGGGGGCTACGCCGCGCAGCCGGGTTACGGGGCCCTCCCGCCGCCGCCCGCTCCGCCCCCGGCCCCCTACCTGACCTCCGGTCTGGCGGCGCCCACGCCTCTGCCCACGCCCGCCCCACCCCGGCCGTCACCCGCCTCCTACGGTTTCCAGGGGGTAACGGAGGCCGGGGTGTCGCTGAAGCGCAAGGCTACAGACGAGGGAGCCGAAGGCCGCTACCGCAAGTACGCCTTCGAGCCCGCCAAAGCCCCGGCGGCCGACGGCACCTCCTACCCCGCCGCGGACAACGGCGAGTGTCGGGGCAATGGGTTCCGGGTGAAGCCGCCAGGAGCGGCGGAGGAGGCGTCAGGCAAGTACGCTGGTGGCGTCCCTCTCAAAGTCCTGGGCTCCCCCGTCTACGGCCCGCAGCTTGAGCCCTTTGAGAAGTTTTCAGAGCGGGCCCCGGCGCCGGCTCCCCGCGGGGGCTTCGCGGTGCCGTCAGGAGAGCCTCCTAAAGGTGTGGACCAGGGAGCTCTGGAGCTAGCGACCAGCAAGATGGTGGACTGCGGACCGCCGGTGCAGTGGGCGGACGTGGCGGGCCAGGGCGCGCTCAAGGCGGCGCTGGAGGAGGAGCTGGTGTGGCCATTGCTGAGGCCGCCCACCTACCCCGGCAGCCCGCGTCCGCCGCGGACCGTGCTGCTCTTCGGACCGCGGGGCGCTGGCAAAGCGCTGCTGGGCCGCTGCCTGGCGACGCAACTGGGCGCCACACTACTGCGCCTGCGCGGAGGTACGCTGGTCGCGCCGGGCGCTGCCGAAGGCGCGCGCCTCCTTCAGGCCGCCTTCGCGGCTGCGCGCTGCCGCCCGCCCGCGGTACTCCTCATCAGCGAGCTGGACGCGCTGCTGTCAGTCCGGGACGACGGCACGGCCGCCGCAGGCGCGCTGCAGGCGCCGCTCCTGGCCTGTCTGGACGGCGGCTGCGGTGCGGGAGCCGACGGCGTGCTGGTCGTGGGCACCACTTCGCGGCCCGCGGCTCTGGACGAGGCAACCCGCCGGCGCTTCGCTCTCCGCTTCTACGTGACGCTGCCCGACGGCCCGGCCCGCGGGCAGATCCTGCAGCGGGCGCTGGCCCAGCAGGGCTGCGCGCTGAGCGAGCGGGAGCTGGCCGCCTTGGTGCAGGGCACCCAGGGCTTCTCTGGGGGCGAGCTGGGGCAGCTGTGCCAGCAGGCGGCGGCCGGGGCAGGCCTGCCGGGTTTGCAGCGCCCCATCTCCTATAAGGACATGGAGGCAGCGCTGGCCAAGGTGGGCCCTAGGGCCTCACCCAAGGACCTGGACTCGTTCGTGGAGTGGGACAAAATGTACGGTTTCGGACATTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002673:ENSBTAT00000003463:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.402
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0000424=AAA=WD(100=19.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATTGTGGGACAAGACAAATACG
R:
CAGGACCCCCGAGTACTTCTC
Band lengths:
247-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]