BtaINT0000882 @ bosTau6
Intron Retention
Description
Bos taurus killer cell lectin-like receptor subfamily K, member 1 (KLRK1), mRNA. [Source:RefSeq mRNA;Acc:NM_001075139]
Coordinates
chr5:100041903-100045875:+
Coord C1 exon
chr5:100041903-100042010
Coord A exon
chr5:100042011-100045782
Coord C2 exon
chr5:100045783-100045875
Length
3772 bp
Sequences
Splice sites
5' ss Seq
ACCGTAAGT
5' ss Score
10.43
3' ss Seq
TTTTTTTTTGTCTTTGACAGCAT
3' ss Score
9.99
Exon sequences
Seq C1 exon
AGATGAGTGAATCTCATACTTATGCCAGTGAACGAGTAAAGTCTTGTGCTTCTAGACAATGGCAAAAGAGAACATGTACATTAACCACAAGCCAACGTGGAGAAAACC
Seq A exon
GTAAGTCCTATATGTTCCATTTGTCTCTCAGTGTACTGAGGTGAATCTTAGAAACTGTGACTAAATTGATGATGAGCATTCAGTTTATTTTACCTTCATGAAGAAAGCAGAAATGAGATTCTCTTTCATATGCTATATGATCTTGCCTGGTAGCTCATATGCTACTGGAATATATAATAAAATTTAGCAGAAACTGTTGTGTTTAGAATCTTTTCATGCCCTAAAAATGATGAAATCATCATAATAATGAAGACAGTAATTTCTAAGGGATTGCTGAACAACTAGACTTGTGTGTGTGTGTTCAGGTACTCTTTGCAACCCCATGGACTGCAGCCTGCCAGGAACCTGTGTCCATGGAATTTTCCAGGGAAGAATACTGGAGTGGGTTGCTCCAGGGGTCCAGGGGATCTTCCTAAGCCAGGGATCAAACCTGGGTCTCCTGCATTGGCAGACAGATTCTTTATCACTGAGTCACCTAGGAAGCCATGAAAAACTAGCCTTAAGGAGAAGTAAATAGAAATGGAAAACAGAAGGGAAATATCAAATTTCCTTCAGTTCAGTTATGTCCTTAAACATTATGGAGGAGATGACTTGACTGCTATTCACAGAAATGTTCCTGGATGGTGAATAAATTATGCTCTCCTCTTAACCAATCTGGAATATGGTGAAAAATAAAGCCTGAGATAGCTTACACAAAAGGAAAAACAACAGGTTACTCTCACCTATAAATTTTGATTAAATGTTATCAAATAACATCATTTTACAATTATTAATTATAGGAATGAAACTGTGCACTATGTAATAATCAAAGTGGAAAGATTGTATGATCATATACATAATGCTGAAAAGGTTTCAGATGAAAATCAATATGAAATCTTAATTACAAAGAACTTAATTTTAGAAACCTCTAAAATATAAGTACTGCTTTTAATATATTTTTTCAAAAGCTACCATTATGCTTATTGCTAAATGGCAGCAGCATTTTCATTGTAGTTAGAAAAAGAGAAGAATTTTCATTATTATTAGTTGAGTAACATTGATTGTTTTGCAGTGTTAACATGAATTAACAAGAAAAGGAAGAGGTAAGTGGTATAAAATTGGAGTTAAAAGGCAAAATTAATATTATTTGAAAAAATATGTGATTTAAAATATTTTTTAAGCCTTCACCTAAAATATTACAAACAATAAGGGTATCTAGTAAGTGGTGGAGAGGGAAATGGCAACCCACTCCAGTGTTCTTGCCTGGAGAATCCCAGGGACGGGGGAGCCTGGTGGGCTGCCCTCTATGGGGTCGCACAGAGTCGGACACGACTGAAGCAACTTAGCAAGCAAGGAAGCAAGCAAGTAAGTGGACTTGATTGAAAATAAGACAAAAATCAATTGCCTTACTAACTACAAAAACAAGGAAAATGTGATGAAAAACAAATGCCATATGCATAGAACAATATCAGAAAAGACTGGCAGCACACTTTTAAATTGAAAAACCTAGAAATAAACTTACTCTTTTAAAATTGTTCCGATGAACATAAAATAAGACATGTAATATAAATAGAAACTATTCAAGGATAAAAGATAGTTTAAAAATGTAACTTATCTCTCCATATTAAAGGAGAAAGGGATGACAGAGGATGAGATGGTTGGATGGCATCACTGACTGGATGGACTTGAGTTTGAGCAAGCTCCGGGTGTTGGTGATGGACAGGGAAGCCTGGCATGCTGCATGTAGTCCATGGGATCACAAACAGACACGACTGAGCGAATGAACTGAACTGAATTTATACAATTAGTGTAATTCTAAGGAAAAAGCATTGTATCATATTTTTAAACTGACAGGTTCTTGGAAAGCTGATATTAAAAGTCTTAAGGCACATATAGGTCTTCCCTAGTGGCTCAGACAGTAAAGAATCAGCCTGTTAACGTGGAAGACCTGGGTTCGCTCCCTGGGTTGGGAAGATTTCCTGGAGGAGAGCATGTCAACTCAATCCAGTATTCTTGCCTGGAGAATTCCCACAGTCTGAGGAGCATGATGTGCTACAGTTCATGGGGTTGCAGAGTCTGACACGACTGAGAGACTAAGCACAAGGCACATATGAAATGTAATGATAGGGAAAATCATCTGGAAAATGAAATATAATATTATATTGTATGCACTAACAAATACTCAAGTATTTTACATATTAGAAAAGTTTACATATTGTTTAAATGGAAACATAGACTAAAAAGTATAGAAATAAATGCAGGTACAAATTGGAATATATTATATGCTAAAGGTAGGGTTTCATATCAATGAGAACACATTGATTTATTGAGCAAATGTTAGAAAAAGTCCACTTGGAAAATAAATTTTTTATAAGTTTAGCTCCTACATAACTTAGTAAACAGATACACACACACACGCACACACACAGCCCTACCAAATACACCAAATACAAAAGGAAACCACAAGATATCACAAATGAACATGGGCATAACATATTTTACAAACTCAGAATAATGAAGATACTTTTATTCATATCAGAAAAAGCATAAGCCATAAAGAAATGTTTGATTAAGTCAACTATTACCCATTTTGATATCTCAAAAGTATCATATGTAAAGTTAAAACAAAATGGTATCTGGGACATGTATTTGCAAAGCATGTGGCATGAAGTGAACTAATAATTTTAACCTGAAAAGAAACAGACCAGACATAGACGTCGCAGAGAAATTAAAAAAAAAAAAAAAAACATTGTTTAACCTCATGAAAAAATGTTTAATCTTATTCATAACAGGAAAAAGAAAGTTAGATTTTAAAAATAATACTGTGTATCAGATATATATATATATATATATATATATATATATACACTTAAAATGTAGAGAAATAAAAATATTTGGTGTGAAGGAATGTGTGAGGAAACAGGCTTTTGAATTTATTTTTGGTGCTACATAAATTGGCGTGGCTTCTTTGGACTGAAACTTTCAATCATTACAAAAATTGAAAAAGTATGTTCCCTTTGATTAATTTCTCCTAGACAGGTACTCAAAAAACATGCACAGATATATATGAAATATTACTCATATTGTTATACCTAAAAGCAAAAACTAAGAAATCATTTAAGTATGTACTGGAAAAAAAATAAACATCTGCCAATAATTAGATTTTTCCCATATACTGATGAAACACAATGCAAGAAGCAAAACCAATACAATATCGTAAAGTAAAACAAAATAATAATAATAAATTTTTTTAAAAAAGAAGCTAATTTTTAAAAAATTGACAAATTTGTAAGACATAATATGGAGTAATCACCAGGATATTTTTTTAATGTTTCCGGAATATTTTGTGTACTTCCTTAAACATGGGAACACATGTATACCTGTGGCGGATTCATTTTGATATTTGGCAAAACTAATACAATTATGTAAAGTTTAAAAATAAAATAAAATTAAAAAAAAAAGAAAGTTGAAGGAAACTGTCTGTATTTCTTATTATATCTGTGTGAAAATTTTTAAATTTTTAAAATGATAACTGAGATTTATTCTAATGGAAGAATGGGACTAGGGAACTTGAAAAAAGGAGTAAGAATGGATATTACATTTTTATACCCTTATTTTTAAATAATTTACAAAATACTTGTTTTACCTTTTACTGAGAAAAATACTCACAGGGAACTGATATCAACCCTCCCCCCTCAAATAAAAACATTTCTAATATTTAAGTTAAACAGAAAGGTAACAGAACCTTTTCTCATATTTCTCACTCTTTTTTTTTTTTTTTTGTCTTTGACAG
Seq C2 exon
CATCTCCATTTGTCCTTGCCAGATCCATTGCTATAGCCATGGGGATTCGTTTCATTGGAATGTTAATAATATGCAGTGCCATGATCATAACTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004917:ENSBTAT00000006469:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]