BtaINT0000920 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MPL6]
Coordinates
chr23:28330912-28331131:-
Coord C1 exon
chr23:28331099-28331131
Coord A exon
chr23:28330960-28331098
Coord C2 exon
chr23:28330912-28330959
Length
139 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
CTGGTCTTGTTCCCCACCAGGCA
3' ss Score
9.01
Exon sequences
Seq C1 exon
GTGAAAAAGGACGGACCTACACCCAGGCTTCAA
Seq A exon
GTAAGTATGGAGGGGGTGATTCCTGAGACCCTTGTGAGGGTGCAGACAGGAGGCCATGGGGGGCTCACCCTCCTCAAAGTTCCTTCTCTACTTTCTCTCCTGTGGGTTCTGACCATGTCCTGGTCTTGTTCCCCACCAG
Seq C2 exon
GCAGTGATAGTGCCCAGGGCTCTGATGTGTCTCTCACGGTTCCTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005146:ENSBTAT00000025832:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.750 A=NA C2=0.588
Domain overlap (PFAM):
C1:
PF126692=P12=FE(25.6=100),PF066236=MHC_I_C=FE(37.9=100)
A:
NA
C2:
PF126692=P12=PD(11.6=29.4),PF066236=MHC_I_C=PD(51.7=88.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]