BtaINT0001409 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MP09]
Coordinates
chr23:27153268-27153485:+
Coord C1 exon
chr23:27153268-27153332
Coord A exon
chr23:27153333-27153472
Coord C2 exon
chr23:27153473-27153485
Length
140 bp
Sequences
Splice sites
5' ss Seq
AGAGTGAGC
5' ss Score
4.22
3' ss Seq
TGGTGACTGGCTGTCCGCAGACC
3' ss Score
8.53
Exon sequences
Seq C1 exon
AAAAGGGAAGTGTTTGCTCCCTCCTCCATCTTTCAGGACAACTTTGTGATCCTAGACATATCAGA
Seq A exon
GTGAGCATCTCCTCCCTGGGACATGCCAAAACCTCCCCCGAGCTGTCCACCTACAGCACATGGTCCGATACTGAGCTTCCTCAGCCCCTGGTTCACCCTCCAGTCTCCTCCTAGGGAGTTTGGTGACTGGCTGTCCGCAG
Seq C2 exon
ACCTCTCACAATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006864:ENSBTAT00000045468:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0183514=A2M_N=PD(32.8=90.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]