BtaINT0001924 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BI37]
Coordinates
chr23:27603551-27604052:+
Coord C1 exon
chr23:27603551-27603597
Coord A exon
chr23:27603598-27603744
Coord C2 exon
chr23:27603745-27604052
Length
147 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
TTGATTATTTTCTTCTATAGTGT
3' ss Score
7.93
Exon sequences
Seq C1 exon
GAGAAGATAGGATCTGAGGCCCTAATGTATCTCTCATGCTCCTAAAG
Seq A exon
GTGAGACTCTGGAGGGCCTGAAGTGGGAGAGGGGTTGGGTTATGGGGATGCTCTGGATTTGAACATTTTGAGTAGTGGAAATTTGTTCAGAATGTCGCCACCTATGATGACTGACCTGAATTTATTCTTGATTATTTTCTTCTATAG
Seq C2 exon
TGTGAAACTGATGGCTTGTGTGGAACTGAGTGAAGAAAGTTGTGTTCACGCCCCCACTCTATGACTTCAGAACCCAGACTTCTCTTTTTGTAGAGATGTCTGAATGTGTCTGTGTTCCTGTAATGTAATGTGAGAAAGTGGGGAGGCTGACCCACCCCTGCCCACAATGGCCTCCATTTCTTCCCCCCACCATTGTGTAATGGTATCATAGGTGTTTGTGTATCATCGTATTGTTTATTTACATATGTGCAGTTCTTTGTTGTATATCAGTGCTACCTCAATAAACCTGTGTAAAAAATATCATTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008959:ENSBTAT00000035878:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.400 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCTAATGTATCTCTCATGCTCC
R:
ACGATGATACACAAACACCTATGA
Band lengths:
258-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]