BtaINT0002216 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G5E5D7]
Coordinates
chr26:25718840-25720850:-
Coord C1 exon
chr26:25720542-25720850
Coord A exon
chr26:25719149-25720541
Coord C2 exon
chr26:25718840-25719148
Length
1393 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAGA
5' ss Score
9.84
3' ss Seq
TGAACTCTCTGTGCCTACAGGAC
3' ss Score
9.84
Exon sequences
Seq C1 exon
GGGGTCTGGAGGTGGTGATAAAGCTGGTGGGTGGAAGGAGCCCCTGTGCTGGCGTCCCGGGGCTGCAGCACTCCAACCAGACACTCACCTCCTGTGACCCGCAGTCCCTCGAGGCTGGCACCATCCTCTGCAAGGAGCTGGGGTGTGGCTCGATGCTGCAGGCCCCCAGCCCCTTGCCAGAGACAGAAGGTCCCAGAAAGGGGCAGCAGTTTGTTGGCTGTGAAGGCTCTGAGCCAACCGTCCTGAACTGCAAGATCGACTGGGCAAACTTCAAGCCTTGTGTCTCGAATGATGAGGTGATCTGCTCGG
Seq A exon
GTAAGAAGGCCGCTCTCCCATCCTTTAGAGCCCTGTGACCCTTTAGATCCGGCGTCCACGGCCTAACCCCAGTTGACCTGGGGCTGCCCGTAACTTTTGAGGTTCTTGGTCTCTGTGTCCCCTTGTGGGGTTAGCTGGGTGACCTCTCAATGAAGAACTGGTGCCCAATGTTTCATGATTTTAGGAATGCTTCCTGGAGGCCAGGGGAGGAAGAGGACTCTCCCCAGAAATGCCACGGTCCTCCTCCTTGGATTAGGCCTTTCCAGGGTTCTCTAACAGAGGTAGTAGTACTTTCTTCTGAGAGGCTCCTGAGCCATGTAAGTGGTCGCTCTCCTGCTGCACACACACGCTTGAAGGCCTTGCCATCAAAGAATCAGTGCAGGATGGAATTTTGAAAGTGCGTTTCGTGTCTAAAGGAAGAGCAGGATGGTTTAGGGTGCTGCTTTGGGAGGTGAGGTGGGGTGGGAGGAGGCTGGCCTGTGCCCAACCTTGATCTCAGGCGATGGCCCAGGCCCTGCTTGTTCGTGACAGAAGCTCAGCCCCAGTGACCTCAATAAAGAAAGGGGCGGGAGGGATGAGAAAGCACGCCCAGGCTCACCCACGGGGCACAGTGAATGCTGGGGCGTGGCAGGTCTGTGCTCATGGACCTTGGCATCCAGAGCCTCAGCCACAGGAGCAGCAGGAGGAGTAGGTGCAGGGCAGCCGGCTGGTGCCTTTCTCTGCCCTTCTCTCCAGGAGGCGCAACAGTGACCAGCATTGTGGTGCTCAGGGATCACTGTCTCCGGGGGATCACTGTCTCCGGGGGATCACTGTCTCTGGGGGTCCACTGGGCCCTTCATGGGGAGAATCCATCAGAACCTTTAGGGGATTTTTCAACACCCTCCCGCATGAGGAGGGTGCAGCCAGCTTTGAGAATCTCTGGGCTAACTTCAACTGTAATTGGGGCTTATTGGAAACACAGCAGACAGCTTCAGAGTTCACTCAACTGCCTGAGCCAACAAAACAGCGCAGGGCTCCCTGGTCTGGATGGGACGAGAAGCTGGCAGCCCAGGTCCCACGCTCCTCGGGAGGCCTACTGGGTGTACCCGTCTCCACCTGCCACCTCAGGGTCACAGGCACTTGCCACCACGCAGTGCTTAGAGGCAGCCTGGCTGTGGGGGGAGGAACACGAACACGGCCGTCTAGGAGGGCCGGGCACAACTGCTCTGTGACCACTGCGGACCAACGCTGTGGCAAGTGAGGGGCTCCAACGGCCGCAGGAAGTTGTAAGAGGGACTGGATGCAAGAAGAGACCACTGTGGGTGTGGGGAGCCCCGGGGGGTCCCTGGGTGGGAGGGAGTACCGATGAACACACTGAGGAGGGAAGGATGGTGTGAACTCTCTGTGCCTACAG
Seq C2 exon
GACACACGGAGGCCCGGCTGGTGGGTGGCGAGCACTCCTGTGCTGGGCGCCTGGAGGTGAGGCGTGGCCTGACCTGGGGCACCGTCTGTGACGCTGACCTGGACCTGGCCACTGCCCACGTGGTGTGCCGGGAGCTGCAGTGCGGCGCGGCCGTGTCCACACCCCAGGGCGCCCACTTCGGCCAGGGCCCGGGGCTCGTGTGGGCCGAGGCCTTCCGCTGTGCGGGCAACGAGTCCCTGCTGTTCCACTGCCCTCGGGAGCCGGGGCACCGGTGTGGGCACGGCCAGGATGCGGGGCTCAGGTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010522:ENSBTAT00000013918:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.154 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=90.4)
A:
NA
C2:
PF0053013=SRCR=WD(100=92.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTTGGCTGTGAAGGCTCTG
R:
GGAACAGCAGGGACTCGTTG
Band lengths:
345-1738
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]