BtaINT0002560 @ bosTau6
Intron Retention
Description
NA
Coordinates
chr18:58995476-59000215:+
Coord C1 exon
chr18:58995476-58995572
Coord A exon
chr18:58995573-59000180
Coord C2 exon
chr18:59000181-59000215
Length
4608 bp
Sequences
Splice sites
5' ss Seq
AATGTATAA
5' ss Score
-3.61
3' ss Seq
AGAGGAACCCAGGTTTAGATAGC
3' ss Score
-31.52
Exon sequences
Seq C1 exon
GAATTTCTGTTTCTGATCTAAATAGTATCTCCACATTGGAGCATGAGAAAAAGCTCTGGACAGTGGGGAGTGATGTAAAAATAGCCAAAAATACAAT
Seq A exon
GTATAAAGAAAAACGAGTATCTCAAAAGGGCTGTTTTTTTCTGTTTAGGAGTGGGACAAGTTGGTGGATTGGATCCTCTGTGGTTGTTACTTAGGAAAATGTAAGGAGAGTTTTGATCCTAGATCCTACAAGGGGAGCATATGTGAATCTCGCAGGCTCTTAGCTGGCCATCTGTAGGTCGAGCGCATGGTCCCATCTGAAGATGCTGTGATGTCTGACCTTCATGTTGTATTAATTTTACTCTTGTGCTGCCCTACCCAGTCTGGGAATGTCAACTGTTCCTGATGTTACATTCTCCTTACTTTGTATCCTTTTACCTCTTAAATTTCTTTGAAATATATTCCTGAGGGTCTGAAATTTTATCTGGTTTCCTTGCTGTGATAATCCACCTATGTTTAATTGGCAGCCTCTGGTGGAGGCTGTCTCTGTGGAGTGGATTTACTAGGTAACAGAAAACTGTGATGGAGACACTATTCCTAATGTTATTTTCTTGCTCTGCACAAAGTCACCACTTGAAGCTATCCAGTAGAGTGGTCAGCATGTTCTAGGATTATGAGAGAGAAAGTATCACGAGAGCCCGATACATCTTTCCAGGTTATTTTCTGGCTTTGGAAACTCTGTCAAGGGCACCGTGACAGTGTTGTTCATGTGTAACAAGGACCATATATTTTAGCCTCTGTCAATGCTATGGGAATTTATCCCAGGACAACTTTGTCCAAGTTCACATTCTCATATCTATGAGGCTATTGGCTGCACTGTTGTTCTGTGCATTGTAGGCATTTTTTATTTTATCCTTGAGTTCAAATTTCTGTGTTACTCTTAGTGTTTCTGTTTTGTATTTGCAATGCGTTGGATGGTTGATTGGGGAATAGTCCCTATGGTGGAACTGGTGATTGGTCCCTCTTAAAATTCTTTATATATTCTTTGTACTCATTTACTATCAGGTGTATGACTTCCACATATTTTCTCTTTTACTGTTGATTGTCTTTTCAAACTCACTGCACTTTAATGCACAGTAGTTTATAATTTTGATATAGTTCAATTTATTAATATCTGGTTTTATTTTGTGGCCTGTGCTTTTGGTGTTATATCTGGTAAATCATTTGTGGGTCCAGTTTCCAGAAACATTTCCTGCACGTTTACTTCTAGTTTTATACATTTGGGACTTAGGTTTAGGTCTTTGAACCATTTTGAGTTCATTTTTGTCTATAGTGTAAGATAATGTTCCAAGTAAATTCTTTTGCTGGTGGATATTCAGTTTTGTCAATATGTCTTGTTTCATAGACTGCTCCCCCCATTTAGTAGTTTTTACACCCTTATGAAACATCTTTTGAACATCTCCGCAAGAGATGTTTTTGTTTTTGTTTTTACCATTCTTTTTAGGTATGCTGCTGCTGCTAAGTCACATCAGTCGTGTGTGACTCTGTGCGACCGCACACAGGGCAGCCCACCAGGCTCCTCTGTCCCTGGGATTCTCCAGGCAAAAACACTGGCATGGGTTTCCATTTCCTTCTCCAATGCATGCATGCATGCCAAGTCGCTTCAGCTGTATCCAACTCTGTGAGACCCCATATACAGCAGCCCACCAGGCTCCTCTGTCCCTGGGATTCTCCAGGCAAGAATACTGGAGTGGGCTGCCATTTCCTTCTCCACTTTTTAGGTATAGTTAATTTACAATGTTGTGTTTCAGGTATACAGCAGTTTACAAGATACTCAGTATAGTTCCCTGAGCTATATCGTAGGTTCTTGTTGTTTATCTGTTTTGTATAAATATTAGTTTGTATATATTTAGACTCCTAATTTATCTCTCCCTTTTCTGCCCCCATCATCATCCTGTACTATCCCCTTTGGTAACTATAAGTTTGTTTTTTATGCTGGTGAGTTTATTTTGTGAATAAATTCATTTGTATCATTTATTTCAGTTCAACATAAAATATCCTATGATATTTGTCTTTTTCTGTCTGATTTCACTTAGAATAATCCCTAAGTCTGTCTATATTGCTGCAAAAGGCATTACTTCATTGTGTTTTATGCTGTGGAGGTGGCAACCCACTCCAGTGTTGTTGCCTCGAGAATTTCATGGACAGGGGAGTCTGGCAGGCTGCAGGCCATGGGGTCTTAAAGAGTTGGACACGGCTGAGCTACTTTCACTTCACAATATTCCCTTGTATATATGTACCACATATTCTTTATCCCTTTGTCAGTGAACATTTAGGTTGCTGCCATGTTTTGCCTGGTATAAATAGTGCTGCTAAAACATTGGGGTGCGTGTATCATTTTGAATTAGTTTTCATCCTTTCTGGATATATGCCCAGGATTGGAATTGCTAGTTCATGTGATAGCTCTATTTTTAGTTCTTTATGGAACCTCCGTGCTATTCTCCAAAGTGGCAGTACCAATTTATGTTCCTTCCAACAGTGTAGGAGGGTTCTCTTTTCTTCACACCCTCTCAAGCATTTATTGTTTGTAGACTTTTTGATGGTGGTCATTCTGACCAGTGTGAGGTGATACATTTTTGTGGTTTTGATTTGCATTTCTCTCATAAGTAGAGATGTCAAACATCTTTTCAGGTGACTGTTGGCCATCTGTTTGTCTCCTTTGGAGAAATATCTGTTTTGATCTTCTGCCCAGTTTTTGATTGGGTTGTTTGTTTGTTTTGATATTAAGCTGTGTGAACTGTTTGTATATTTTGGAAATAAATCCCCTATAGGTATCATCATTTGCATATATAGTCTCCTAATCCAAAAGTTGAATTTTTGTTCTTTTTTTGGTTTCCTTTGCTTTGCAAAAAGGTTTTAAATTTAATTAGGTCTCATTTGTTTGATTTTGCTTTTATTACCATGACTGTAAGAGATAGATCCAAAAAAAATTTGCTGACATTTATATCAGTGTTTTGGATTTGTTTTCCACTATGAATTTTATAGTATCTGGCCTTGCATTTAGATGTTTAACACAGTTTGAGTTTATTTTTGTATGTGGTGTTAGAGAATGTTGTAATTTCATTCTTTTTCATATAACTATCCATTTATGCCAGCATCACTTATTGAAGAGATTTCTTCATTCTGTATTCTTTCCTCCTTTGTTATACAATAATTGACTCTAAGTAAACTGGTTTATTTCTGGGTTTTCTCTCCTGTTCTACCAATCTGTGTTTCTGTTTTGTGCCATCTTCATACGACTTCCCTGGTGGCTCAGACGGTAAAGCCATCTGCCTACAATGCAGGAGACCCAGGTCCAGGTTCACTCCCTGGGTCAGGAAGATCTGCTGGAGAAGGAAATGGCAACCCACTTCAGTATTCTTACCTGGAGAATCCCATGGACAGAGGTACCTGGTAGGCTACAGTCGATGGGGTCACAAAGAATTGGACACGACTGAGCAACTTCACTTTCACTTTGTTGACTCTCAGTTTGTAGTGTAGTCTGAACTCAGGGAACATGATTCCTCCAGCTCTGTTCTTTGTCAAGATCATTTTAGATATCAAAGTCTTTTGTATTTTGGTACAAATTAAGTTTTTCTTTGTTTTATGAAATATGTCATTGTTAATTTGATAAGGGTTGCATTGAATATGTCGATTGCCTTGGATAGTATGGTCATTTTGACAGTGTTACTTCTTATGTATATGTTTGTGCCATCTGTTTGTGTCATCTTTGGTATCAGTCATCAGCATCTTATAGTTTTATGAGTACAGTTCTTTTGACTTCTTAGGTAGGTTTATTCCTTAGAATTTTATTCTTTTCTATGAGATGGTGAATGGGATTGTTTCATTAATTTCACTTTGTGATATATCATTATTAGTGTATAGAAATGCAGCAGTTTTTTATATATTTTGTATCCAGTAAGTTGACTCTGTTCATTGATGAGGTCTAGTAGTCATCTGGTGGCATCTTCGGGATTTTCTGTCTGTAGCATCATAGTGACAGTTTTACTTCTTTTTAATTTTTTTTAACTTGAATTCCTTTTGTTTCTTTTTCCTTTCTGATTGTTGTGGCTAGGACTTCCAAAAATATATTCAATAGAAGTGGCAATAGTGAACATTCTTGTCTTATTCATGTTGTTAAGGGGAATGCTTTCAGTGTTTCCCTGTTGAGTATGATGTTAGCTGTGTATTTGACATATACAGTCTTAATTATGTTGAGGTAGGGTCCATCTGTGCTGACTTTCTGAAGGGTTTTTATCATAAATGGCACTTGAATTTTGTCAGAACCTTTTCTGCATCTATTGATGATCATATGGTTTTTAGTCTTCAACTGTTAATGTGGTTGTATCATAGTGATTAACTTGTGGATATTGAGAAATCTTGCATCCCTGCAATAAATCCCACTTGATCATGGTATGATCCTTTTATGTCCTTTTATGTATTAGTAACTGTTTGAATCTGCTCTTTTGAACTCAGGGAAGGTCTAGGAGAATAAAGCCTTTATTCTACAAAAAAGAGTTGGATGCCTCAGAAAGGCTTTTGTAACTGGGAAGGTCTTCCAGAGTCAGTTTCAATCCCTCCTTTTCTTTGATACTCCTCGATCTTGAGATGAACATGTGTGGAAGAAGAAATGAAATAAATGTCCAATAGAGAGGTTAATCATACTTGACAGAGGAACCCAGGTTTAGAT
Seq C2 exon
AGCCTTTTCCTGGATTTTCCTTCTGATTTCTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011926:ENSBTAT00000052670:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development