BtaINT0002804 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MSL7]
Coordinates
chr17:45057867-45059370:+
Coord C1 exon
chr17:45057867-45058008
Coord A exon
chr17:45058009-45059274
Coord C2 exon
chr17:45059275-45059370
Length
1266 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
3' ss Seq
TTGTGATTTTCCCTGAACAGGGT
3' ss Score
9.1
Exon sequences
Seq C1 exon
ATTGTGCTCTTACAGGGGTCATTCTCATTTGAAGATTTATCTGTGGACTTCACCCAGAAGGAATGGCAGCTACTGGACCCCCATCAGAAGGACTTATACAAGGATGTCATGTTGGAGAATTATAGCAGTCTCGTGTCACTAG
Seq A exon
GTAAGAAAAGCTACCCAGGATTTCCCTGGCAGTCCAGCAGTTAGAACTCTGTGCTTCTACTTCAGGGGTCCTGGGTTCAATCCCTGGTCAGGGAATTACAATCCTGAGAGCTTTGTGGCATGGCCAAAAAAAGAAAAACTTCCCAGAAGACCTCATATTGTATCTAGTACCTTGCTTGTTCTTCTTTAGTTTCTGAGAGTTCTGGGACTTGCAAAATTTTTAATGATTTGGACCTAAATTTTAGAGATCAAAGTTCTTGGACTATGACAGTCCCAGGGAAAGTATTTGAACCTCACTTTCCAATAATGAAGTCTTAATTTCATTGTGCCGCCTCTGAAGCTAATAGTAATAGTTGTAGTTAGGCTCCTGAGGCTTCGCCAACAAAGGTCTATATTGTCAAAGCTATGGTTTTTCTAGTTTTCATATATAGATGTGAGTGAGAGTTGGACTATAAAGAAGGCTGAGTGTTTAAAAATTGATGCTTTTGAACTGTGGTGTTGGAGAATACTCTTGAGAGTCACTTGAACTGCAAGAGGATTAAACTAGTCAATCCTAAAGGAAATCAATCCTGAATATTCATTGGAAGGACCGATGCTGAAACTGAAGCTCCAATACTTTGGCCACCTAATGTGAAGAGTCAACTCATTAGAAAAGACCTTGATTCTGGGAAAGATTGAATATGGTTGGATGGCATCACTGACTCAGTGGACATGAGTTTGAGCAAGCTCTGGGAGATGGTGAAGGACAGGGAAGCCTGGCATACTGCAGTCCATGGGGTCACAAAGAGTCGGACATGACTGAGTGACTGAACAACAACAAAGCTCCTGAGGCATGTAATTTACCGAATTTCACATATTGTTCTTATATTGACTCAATTGTAAGAGCAATCCTGTGTGGCAGATGTGTTGCACTCTTTTTTTTTTTTTCTTTTTTTTTTTCTAATGAGGAAATTGAGACAAAGAAAAAAGTTAAGTATTTTTCCCAAGGCCTGACAGCTAGGAAATGAGCCTGAATTTGAACCAGAGCAGACCAACTACAGAGACTCTGAAGGGTTTATGGTTTTGGACTTGAGTTATAGAAATCAAAGATTCTTAGACCATATTATCCACTGGGAAGACTGTTACCATTCCTCTGAGGATTGTTTACTTTGTTGGTATTCATGTGGGTGGCTTCACTGGGTCAACTAATTCCAAACCTTGCTCCTTCTTCAGAGGCCTCAAAGGCCATGCAGTAGGGGCCAAGGTCTTTGTGATTTTCCCTGAACAG
Seq C2 exon
GGTATGAAGTTATGAAACCTGGTGTCATCCTTAAATTGGAGCAAGGAGAAGACCCATGGACAGGAGATGGAGAAATTCCAAGTTCAGGCTCAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013001:ENSBTAT00000029730:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.152
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=85.4)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGTGCTCTTACAGGGGTCA
R:
CTATTGAGCCTGAACTTGGAATTTCT
Band lengths:
238-1504
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development