BtaINT0004108 @ bosTau6
Intron Retention
Description
NA
Coordinates
chr24:50153499-50154207:-
Coord C1 exon
chr24:50154184-50154207
Coord A exon
chr24:50153610-50154183
Coord C2 exon
chr24:50153499-50153609
Length
574 bp
Sequences
Splice sites
5' ss Seq
TATGTTTGT
5' ss Score
-8.43
3' ss Seq
CTTTTGTTTTACTCTTTCAGTAC
3' ss Score
9.55
Exon sequences
Seq C1 exon
AGGATGGGTGAGATTTGGGGATAT
Seq A exon
GTTTGTGGTTTAAAGAATGCCCAGCTAAAATGAGGTTGCTGACAACTCAGGAATATATTAACACAGTTTCAATTTGCTGACCACTTTCTTTCACCTCTGCAGGAAAATAGCTTTGACCCTGAATGCAAAATACTAAAGCAGAGATTCCCAGGCTCTGAGGACTTGCTACACTATCTTGTTGGGTTTTGCACGTGTCATTTTATGCTTTTGTTTGCAGCTCACTAGGTGCTCCCTCTGACGTAGATATTTTGCAGCACCTTTTGAGATGGTATAAAACTCCGGGTAGAACAAACTAAACTCTGGATAGAACAAACTGTAGGCTTGGCATTCCCTGATAGAATTAGAATTTCATTGATCTGTAATATTCTCATAGGATCTTGAAAGCGTCTTCTGTTACCAGTCCAGTGAGTTATCATTTGTCTGTCGTCCTGGTACGGGATCACCTTGTATCTTGAGATGAGAAGGGAGGAAAATGTGTGGAGACGGCTTTAAACGTTCTCCTGAGGGTCCCTGGTAGAGAGCACACCTGGAGGCTTGTCGCGTCATCTAAGCTTCTTTTGTTTTACTCTTTCAG
Seq C2 exon
TACACAAGGGTCTGGATCCCTGACCCGGATGAGGTGTGGCGCTCCGCTGAATTAACCAAGGACTACAAGGAGGGGGACAAGAGCCTCCAGCTCCGACTGGAAGATGAAACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019455:ENSBTAT00000061584:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.027
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]