BtaINT0005160 @ bosTau6
Intron Retention
Description
Bos taurus cytochrome P450, family 2, subfamily c (LOC511498), mRNA. [Source:RefSeq mRNA;Acc:NM_001075520]
Coordinates
chr26:20888869-20891405:-
Coord C1 exon
chr26:20891218-20891405
Coord A exon
chr26:20889011-20891217
Coord C2 exon
chr26:20888869-20889010
Length
2207 bp
Sequences
Splice sites
5' ss Seq
AAGGTTAGA
5' ss Score
6.12
3' ss Seq
TCTCTCTTTCTTGGTTCCAGGGT
3' ss Score
10.01
Exon sequences
Seq C1 exon
CCAAAGTTCATGAAGAAATTGACCGTGTGATTGGACGCACCCGAAGTCCCTGCATGAAGGACAAGATGAAGCTGCCCTATACAGAGGCTGTGTTGCATGAGATACAAAGATACGTCACCCTCGTTCCTTCTAACTTACCCCATGCTGTGGTCCAGGACACGAAATTCAGACAATATGTCATCCCCAAG
Seq A exon
GTTAGAGGTGGCTGGGAAAGCTGGCTGAGATAGAAGGTGCAACATGGTGCCACTCCACCGCACGGTAGATGGGGCCTGTTAAAGGCATCGTAGCTGTTTCAGGAAGAGGCAGTTGAGAGACGTGGAAAGAACACGAGGCCTGAGTTACACGGCCTGGGTTTAAATCCGTCACTGCTGTGCAGTGTCCTCTCAGGCCATTGTGTCACCTCTGTGGTTCTGCCTCTGCCTCCCTGGAATGGGGAAGCTAACCCAGGGCTTCCAACGCTCCTCACACTCTCAGATATAATAGGATATATTAAGGGAGAAGTGATTGGCATTAGTATGAATCTTGTGGGAACAGAAATCTGATTTTCCATGATAGATTTTAAAAAGCGGGAAGAGATGGACAGTGTATCTGCAGCTCTAAAGTAATCAAGTGTCAACTTTCTTAAACCCAAATTCTCTCCTCCCGAGATCTCATGTACCAGACATTTGGGGCATTGCTGCCCATAATAGTTAACGATGATCAAAACCTTCACACGGACACGGGATGTAGTCAGCCTTCTGCAGTGATTAAGGGGTTGGGTTTTACATTTGAGAGTGTAGAAGAAGAAGAAAAGGTGTCAAACCTGACCAGACTACTGCAAAACTGAAGCAGCCCCCAACCTTACTGCCAAATCCCAGTGCAAAAGTCTATTAACACATAAGTCTAGTATCACATTAAAAATGCTATTCCACCACCAAGTGAAGGTAATCAGGAACACAGGAAGCTCTAACACCAGAAAATTTGGTTTAATAAAATTCACATAGAAATAGAATTTAAAGAAAAACCACATGGTAATCTCATTTATACAGAAAGTGCTTTTGATAATATTAAAGAGTTTCTGCTCTGTTAGTTGCTCAGTCATGTCCGACTCTTTGTGACTCCACCAGGCTCCTCTGTCCACAGAATTTTCTAGGCAAGAATACTGGAGTGGGTTGCCAATTCCTTCACCAGGAGATCTTCCAGACCCAGGGATTGAACCTGGGTTTCCTGCACTGCAGGCAGATTCTTTATCATCTGAACTACCAGGGAAGCCCCACCTATAATAAAATAGGAATAAATTTCTGATAGCAGTGATTACATTAAGAAGGAAACCAAAGAACTTGAGTATAGGAAAAAGAAACTTATTTTCAACTTGACTTTTTTTTTATACTATGTACATGTATTACCTACTCCAAAAATTGTGAAATAATGTTTCAGGAAATAAAAAATGAAGTAAAATGGCAAGAGGAGGCTTTCGCTTAAATAGGGGTGCTTTATGATCAGATAGAAGTTGGGTCAAATTCTAATTATGCCACTTGCTAATAACCACAAGTAAATTGTTTCTTCTCTCTGAATCTCAATTTCTGCATTTATACAATGAGCCAAAAAAACAAGATCCTAGTGAATATGGTTGAAGTGAGGATTAAATGACATTTATAAACAATTCAACACAGTGTCAGGTAAATGTGAAGCATCCTGTATCAGTGGTCATTATCATTTTGTCATTTAAACCTCACAAGTTCTAATGGGGCAAAGAGGAAAGTGTATGGTGGCTCAGACAGTAAAGAATCTGCCTGCAACACAGGAGACACAGGTTTGATACCTCGGTTGGAAAGATCCCCTGGAGAAAGGAATGGCAACCCCCTCCAGTATTCCTGCCTGAAAAATTCCATGGACAGAGGAACCAGGCTGGCTACAGTTCAGTTCATGGGGTCACCAAGAGCTGGACATGACTAAGCGACAAACATACGCACATGCACGCCATTTTAGAAGTGAGGAGGTGGGCTTTGAGCCAACGGATTTTGTAGATTACAAAGTACTATACTGTATTTTCTTACATTCGCACCTGAATTCAGAAAGAAAAAAATTGTGAAAAGTGAACTCTTCCAATTTGAGGTGGCGGTTCTAGTAAAGCACATGTCTGAACAATATGAGCTGCAAATCTTAGTTTTTGAACAATTGTTTATTGCACATTGACTGTAACAGTTGCTCTTCCCCCAGAGAACTATCTTATTATTCGATAAAAGGTATTGTATGATACTGGGTGTGAAAAAACTCTCACACAAGACAGTGAGAAAGCTCTCATACAAGCTTCAAGAGTGCTCGGTCCTATTTAATCCACTATAATTAAAAGTGTTAGGCTTTTTATGAACTGAAGATAAGTATGATAACATGCCATTCCATCTCTCTTTCTTGGTTCCAG
Seq C2 exon
GGTACTACTGTATTGCCGTTACTGTCTTCCATCTTGTACGACTGCAAGGAGTTTCCTAACCCAGAGAAGTTTGACCCAGGCCATTTTTTGGATAAAAATGGCAGCTTCAGGAAAACAAAATACTTTGTGGCTTTTTCCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000023939:ENSBTAT00000032930:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.5=100)
A:
NA
C2:
PF0006717=p450=FE(10.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]