BtaINT0005353 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1B750]
Coordinates
chr16:55720201-55721536:-
Coord C1 exon
chr16:55721244-55721536
Coord A exon
chr16:55720759-55721243
Coord C2 exon
chr16:55720201-55720758
Length
485 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CATCTGTTGTTTCCCCACAGGAG
3' ss Score
12.09
Exon sequences
Seq C1 exon
ATCAGAATGAGTCTTTGGGCCCCACCCAGACTCCTGGACCTGGCAGCTATGAGCGTGCTAAGGAATGAGGATTTGGCCATGAGTTCTTTGGAGTTTCTGCCCATTGAGCTTTTCCCCCTACTCTTCATGGAAGCCTTCTATGGGAGTCACATTAAGACCCTGAAGACCATGGTGTATTCCTGGCCTTTCGTCCGCCTGCCTCTGGGGGGCCTGATGGAGCCGCCTCATCTGATAACCTTACAAGCAGTACTGGATGGACTTGATGTCCTGCTTTCCCAGAAGGAGCACCCCAG
Seq A exon
GTGAGTCTAATCCAGGTAGCCTGGAAGGTTACTAGACATCCTGAAAAGACAGCTGGGGTCATAGAGTGAATGGTCAAGGAATGCACCAAAGGCTTCTGATGATGTCAATGAATTTCGAGGCCTTGACCACTGCTGAGCCCTCTTTGGGAAATGCCTTCTGGAAGTGTAGGAGTGTCTAAGATGCAGGGAAACCTAAGAGAACATGTCCCAGCCTCTTCCCAGGGATTCTTAAGGATTGTAGAAGTATAAAATCAGGAAGCATGTAGGGGCAAAGGAGATAGAGGAAAGTGAGGCAGTATCCCTACTGAAGAGGAAGTGGGCAAGGCAGCAGGTAATGTCAGGAATCTGAAGTAAAAACTCAGGTGAGAAGTCTTAGTGTTGCCTATATTCTGAGACTGTGGTTTCATTCAGCCTGTATTCTGAGACTGTGATTTCATTCAGTTTGGATTTTAAACCATTGCTGCCCATCTGTTGTTTCCCCACAG
Seq C2 exon
GAGGTGCAAACTGCAGGTGTTGGATTTAAGGAATACTGGCCAGAACTTCTGGAGCATATGGTCTGGATACATGGACCACATGTACTCAAGCTCACTGACGGCACCAGTTCCTGAGGACAGGTCAAGGACAAAGCAGCCCTTGGCTCCCTTGGAGGTGTTCATAGAGATGAACCTCAAGGAATGGGCCATGGATGAGTTCCTCACCTACCTCATGAGGTGGGCAGAACAAAGAAAAGGTTCCATACACCTGTGCTGTAAGAAGCTGAAGATCTTTGGAATGCCTGTGGAAAATATTATGAAGGTCCTGAGTATGGTGCAGCTGGACTGTATCCAGGATGTAGAAGTCAACCAGAACTGGCATCTGTCCAGCCTGGCCACATTCGCTCCTCTCCTGGGCCAAATGAGTAACGTGCAGAGACTCATACTTTCTGCCTCTAAAGAGCAGGAACAGCATGTTGTTGTCCAGTTTACCTCTCAGTTCCTCAAGCTGCACCACCTCCGGGATCTCTATCTGGAATCTCCCTTCTTCCTGTCAGGCCGCCTGGACCAGATGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000024791:ENSBTAT00000001607:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.005
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGTTTCTGCCCATTGAGC
R:
GCTGCTTTGTCCTTGACCTGT
Band lengths:
342-827
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development