BtaINT0005478 @ bosTau6
Intron Retention
Description
Bos taurus cytochrome P450, family 4, subfamily F, polypeptide 2 (CYP4F2), mRNA. [Source:RefSeq mRNA;Acc:NM_001035042]
Coordinates
chr7:8560061-8561864:+
Coord C1 exon
chr7:8560061-8560331
Coord A exon
chr7:8560332-8561797
Coord C2 exon
chr7:8561798-8561864
Length
1466 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
3' ss Seq
GGATCTTGCTTTCTCTCCAGGAT
3' ss Score
9.23
Exon sequences
Seq C1 exon
GAAGCCCAGTGAATATATTGCTGCCATCTTGGAGCTCAGTGCCCTTGTTGCAAAACGACACCAGGAGATTTTTTTGCACATGGACTTCCTGTACTACCTCACCCCAGATGGGCGGCGCTTCCGCAGGGCCTGCCGCCTGGTGCACGACTTCACAGATGCCGTCATCCAGGAGCGGCACCGCACCCTCCCCAGTGAGAGTATTGATGACTTCCTCAAGGCCAAAGCGAAGACCAAGACTTTAGACTTCATTGATGTGCTCCTGTTGACCAAG
Seq A exon
GTGGGCTCCTCTGGTTTCTTGTTCAAGAAGTAGAATGGACCTTGGGAACTTGATTTGATCAAAGAACTTGGACTGGATGCAGAGGGCACTGGGGAGCCATGTGAGATGCTCATGGAAGGGAGGGGTGGGTTAGGATAAGTTTTAAAGATGACCAATATGGAATACTGCCTGCAGGAGGGCTGCTAAATCTGAAATTTTGTAAGGGGCCTGAGATTTCACTCTACTTCCAAGTTAATAAGACAGGATATGTGCATATACATGTGTGAGCTCAGTCATGTCTGACTCTGTGACCTCGTGGATTGTAGCCCACCCTCGTGCTCTGTCCATGGGATTTTACAGGCAAGAATGCTAGATTGGCTTGCCATTTCTTCCTCTAGGGGACCTTCCCAAGCCAGGGATCAAACCCATGTTTCCTTGTATCTCCTGCGTTGGCAAGCAGATTCTTTACCACTGAGCTACCTGGGAAGTCTCACATGTCTGTATACTTGCATACATATATACACATGTATGTATATATACAGAACCCTAGATAAGAGCAACCTATGTATTATTTATAGCAGTAACAGTAGTCAGAGTAGAATTGTAGCCTTGGTTCCCCATCCCCAAATTCCTTTGAGGGCACCATGATGCTTCTATCTTTACATGCAGCCATGCTCTCATGGAGGGGAAGTACTGCCAAGTGTTGAATTCTAGAACTCTTTTTTTTTTTTTTGACCACCCCATTTGGCATGCTGGATCTTAGTTCCCCAACCAGAAATGGAACCTGTGTCCCCTGCAGTGAAAGTGTGGAGTCTTAACCATCAGACTGCCACTGACATTCTGAATTTTAGAACTTATGCAAGATATATGCTCCCTTCTTCCATACAAGGGTGGTCAGGGAGAGGGAAAGAGAGAAAGAAAAGAAGAAGGGAGCAGTGAGGAGGGGAGGAGGGGAGACAAGAGGAGAAGATATGAAACAATATGAAACAAGAGTAGAAAAGACAGACAATGTTCTGGAGTTTAAACAAATCCTCACTGGAAAGAAATTGAAGTCTATAGATCTACAGGTTTATAACCCATTCCTTATCTTTAGGGGAGAAAAGGAATCTCTGAATTTATTGGGTTGCCAAAAACCCAAACAAGCTTTCTGTCCAACCCAATACTATCATACAAAGTGAGCAAATGGCACTGGGGCAATGTTCAATCTCTAGTTTCTAAGTTTCCATTCAGTCATTCTTTAACCCAGGTTGCATCATGTAGAAACATGAAAATATTTATGGATCTTTGATTCCATTCACCAGGGACAATTTAAGAGGCAAAGTGGTCAAGAGGAAATCTGTGTGGTGGGTCCTCTAGTGATAGTGTCCAGGAGTTCAAGGTGGCCTTGGGTTTCTAGATGGATGATGGAGATGTTCAAAGACTGTCTCAGGTTAGACTCAGGTGCCTTCAAAGCTGGTGTGATTCTGGGGATCTTGCTTTCTCTCCAG
Seq C2 exon
GATGAAGATGGGAAGGGATTGTCAGATGAAGATATCCGAGCTGAAGCTGACACCTTCATGTTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000025748:ENSBTAT00000036366:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.043
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(19.4=100)
A:
NA
C2:
PF0006717=p450=FE(4.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCCAGTGAATATATTGCTGCC
R:
TCAAACATGAAGGTGTCAGCTTCA
Band lengths:
334-1800
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]