BtaINT0005746 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MWN7]
Coordinates
chr5:40563587-40563869:-
Coord C1 exon
chr5:40563838-40563869
Coord A exon
chr5:40563750-40563837
Coord C2 exon
chr5:40563587-40563749
Length
88 bp
Sequences
Splice sites
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
3' ss Seq
AATTTGGATTGTATTTGTAGCCT
3' ss Score
2.84
Exon sequences
Seq C1 exon
CTTGTTATGGTCCACTGGGAGAAAAGAAGTCA
Seq A exon
GTAAGTACACAATTTGTCTCTACTTTAATACAAATTTGCTGTCATTTGTATGTTTGAATAGAAGTCTAAATTTGGATTGTATTTGTAG
Seq C2 exon
CCTGGAGACATATGGACTGCCAATTGCCACAAATGCACCTGTACTGATGCAGAGACTGTAGACTGTAAACTCAAGGAGTGTCCTTCTCCACCCACATGCAAACCTGAAGAGAGACTTGTAAAGTTCAAAGATAATGATACCTGCTGTGAAATTGCATACTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000026792:ENSBTAT00000053550:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.364 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTCCACTGGGAGAAAAGAAG
R:
TGCAATTTCACAGCAGGTATCA
Band lengths:
181-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]