BtaINT0005820 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BIP7]
Coordinates
chr21:35113325-35114340:-
Coord C1 exon
chr21:35114190-35114340
Coord A exon
chr21:35113458-35114189
Coord C2 exon
chr21:35113325-35113457
Length
732 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
CCTTCTTTTCCCTCACATAGGTC
3' ss Score
11.32
Exon sequences
Seq C1 exon
GGGAGATCATCGGGGGCACAGAGAGCAAGCCACACTCCCGCCCCTACATGGCCTACCTGCAAATTGTCACCTGGCATGGTAAGCTGGCGGCTTGTGGTGGTTTCCTGATAAGAAGGGACTTTGTGCTGACGGCTGCGCACTGTGCAGGAAG
Seq A exon
GTGAGACGATGGGTCTTGTTTATCTCCAAATGGGAGGGGAGCAACCAGGAACAGCTCCTCGGGGGCCTGAGAGGGAGCTCCTAGGGCTGGGTCTCTTTGGGAGAGACAATACTTGGCCTTAAGGAAATCATTCTCAGACTGGAACGGCTGTCCTGACCCTCAGTCACTGTGAGCTCAGCTCCCCTCAGAGGAAAGGGGACCTCATCCCAGTGCCCCTCTTCTAAAAGCGGCTGCCCCTCCCCAACCCCAACACAAGCGATGTGGACTCACTCTTCAGGGGCCCACCCAGTTCTTGGACCACTTCCTCCATGCCCTTTTCAAGAACACTGGCCCTTAGTTCTCAGGGTCCTGAACCCATCCTTTCCATGGGAGACAGAGAACAGTGTCCACCTGAGACCCCACCACTCCCCCCTTTCCTCGGACACCTCTGCCCTCAGAGAGGTGGCCCTCATTAGGGCACCTTGATTAGGAAGTACCTACCCTGTCCCCTGGGTCCTCCGTGGCCCGCTCACTCCCTGGCGTCCCGAAGGCCCTGGAAATTATCTCTGTCCCTGGGAAAGCTCTTCCTTGAGTAAAGCCTGAGCCCCTCGCATACATGAGTAGCTCAAAAAAGGGAGGTGGGAAGAGATCGCTGACCCTGGGAGAGACTACATGCCCTTTCTCAGAGTGGGCGTATCTCAGCAGACACCCCACCATCAGCGTTTCACCTTGTCCTTCTTTTCCCTCACATAG
Seq C2 exon
GTCTATAACAGTCATCCTCGGAGCTCATAACTTACAAAAGAAAGAAGACACGTGGCAGAGGCTTGAAGTCATAAAACAGTTTCCTTACCCAAAATATGAGCATGTTGGTCTCCACGACATCATGTTACTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000027033:ENSBTAT00000011737:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(22.0=94.1)
A:
NA
C2:
PF0008921=Trypsin=FE(20.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCATCGGGGGCACAGAGAG
R:
TCAGTAACATGATGTCGTGGAGA
Band lengths:
278-1010
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]