BtaINT0006095 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1B977]
Coordinates
chr5:100188642-100189646:-
Coord C1 exon
chr5:100189608-100189646
Coord A exon
chr5:100188788-100189607
Coord C2 exon
chr5:100188642-100188787
Length
820 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
3' ss Seq
AGAGAACCTGTGTCTTGGACCTC
3' ss Score
-16.78
Exon sequences
Seq C1 exon
CATCTTCCAAAAAATCACCTCTCAAAATCCAGCAGAAAG
Seq A exon
GTAGGTTTTACAGACTGATTTCTTAAACTGATTTAAAAGTATTATTGTGCTGGTCAGAGACCCAGGTTCTATCCCTGGGTCCCTGGAGAAGTGAATGGGTACCCACTCCAGTATTCTTGCCTTGAAGAATTCCATGGACAGAGAAATCTGGCGGGCGATACAGCTCACGGGGTCGCAAAGAGTCGGACATGACTAAGCGACTAACACTATCACTGTCTATCCACACACACAGAGATTTCTCTGGGCAAGTTACTCTAGGATGTGTAATAGAAAATATAAGACATAATTCCAGCCATCAAATAACTTACAGTCTTGTGAAACTGAGGTTTGTGTATAATTAACTGAAATACAGGAAGACAGGGGTAAGGTTTGCTGGGATGTTTTAAGAAATTGTTTTAAGACTTCATATGTTTGTAGGGGAATAGAAATACTTGTAATGAGAAGAAATTTTGGAGAAGTAGAGTTTATATTACAGGGGCAAAATATTAACAAACATTAATCTAATGGAGATGTAATGTGAAGACATTCTAGCCCTGAAATGCTGTAATATCAAAGTATGGAGATAAGAACATGAATAGATTCTAGGTCACCAGTATCATATACTGTATGAAGGGTACAACACGTCTCAGAAGTGAGAGAAAAAGAAAAATTTTCATTCCAATTCATAATTTTATTTTGAGTAATTTTTGTGTTTATGAAATGTTACTCTCATGACAAAGGTGTACTTCTGTTCACAAGGCGTATCTAAGAAATAATAAAGTCAGGCTTTGTGATTTTTTTTTTTCCCCCAATGCAATCATAGAGAACCTGTGTCTTGGAC
Seq C2 exon
CTCAGTGTCATTCTTGTCCAGAGAATTGGGTTTGGTTCAGATGCAGCTGTTACTACTTTTCCAAGGGAATGTTAACTTGGATAGAGAGTCAAAGTGCCTGCTCATCTCTAAATTCCAGTCTCATCAAGATAAACAAGGAGGAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000030426:ENSBTAT00000042959:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF054737=Herpes_UL45=FE(9.2=100),PF148621=Defensin_big=FE(17.1=100)
A:
NA
C2:
PF054737=Herpes_UL45=FE(33.8=100),PF148621=Defensin_big=PD(48.7=75.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]