BtaINT0006357 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BKG0]
Coordinates
chr7:16611469-16611925:-
Coord C1 exon
chr7:16611845-16611925
Coord A exon
chr7:16611577-16611844
Coord C2 exon
chr7:16611469-16611576
Length
268 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAA
5' ss Score
6.82
3' ss Seq
GGGCTGCTTCTCCCCCATAGATG
3' ss Score
9.33
Exon sequences
Seq C1 exon
CAAAAAGCCCAAGACCTCCGGGGAGCTGACAAGTGGGTGAAGAAGCTGAGGAGCTGGCAAAAATACCAGGGCAGCACGAAG
Seq A exon
GTACAAAGCTGAGTATCCTGACCCTGCAGGGCGCTAGCCTTTGGGCCCCACAAGGCTCGGGAGATTCTGATGCCAGGGCGGCAGCCAGCCCAGCCCAGGACCCCACAGGGAGGGAGCAGTTGGGGCTATTCTCCACTCCCAGTTTGGGAAGATCAGACCCAGCTCTAGGAAGACCCTGCCCCTCTGCAGCATCTTCCACAGGCCTCTCGCTCCGTCTCCTCCCCGGCGTGGTGCCTGCATCTGTCTCAGGGCTGCTTCTCCCCCATAG
Seq C2 exon
ATGTGCCGAAGGGTATCCATGGGCATCCCTCCACCAGTGCGAGGGCAGGCCTGGTCTCTGCTCTGGGACCTGGAGAAGGTGAAGGCGGAGAACATCAGGAAATATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000032364:ENSBTAT00000045920:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0056613=RabGAP-TBC=PU(12.2=69.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAAAGCCCAAGACCTCCGG
R:
TGATATTTCCTGATGTTCTCCGCC
Band lengths:
188-456
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]