BtaINT0006768 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G5E611]
Coordinates
chr17:25035265-25035616:+
Coord C1 exon
chr17:25035265-25035410
Coord A exon
chr17:25035411-25035529
Coord C2 exon
chr17:25035530-25035616
Length
119 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGG
5' ss Score
4.41
3' ss Seq
CTTGCTCATTTCCCTGGCAGATC
3' ss Score
10.79
Exon sequences
Seq C1 exon
GATACCACGCATCTCGTTCCACTCCAGTTCAGTGGCACCAGGGCTTTGAATGGAAGGCATACAGGCGCAGGCACCACGACAGCAGCGTTAACTTCTTCAACTGGTTCTTTGACCACAATTTCACAGGATCTGACTGGATTGCTGAG
Seq A exon
GTGGGGTCCCACGTGGCCACTGGGCCAGAACTGGTGACTTATGTCGGAGTTGTTGGCCGTGCACGGGAGGGCTCATGGTCTGGCCAGGCCTGTGCTGACCTTGCTCATTTCCCTGGCAG
Seq C2 exon
ATCATCATAAGGGATCTGTGGCCCAATCCTTTGCAGTACTATGTGAGGAGGAAGGCTGCACCACAAAAGGTACCAGGAGGACGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000035012:ENSBTAT00000049474:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.276
Domain overlap (PFAM):
C1:
PF0095613=NAP=FE(25.7=100)
A:
NA
C2:
PF0095613=NAP=PD(9.1=58.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCATCTCGTTCCACTCCAG
R:
CTCTCGTCCTCCTGGTACCTT
Band lengths:
226-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development