BtaINT0006903 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N096]
Coordinates
chr25:19663736-19664291:+
Coord C1 exon
chr25:19663736-19663858
Coord A exon
chr25:19663859-19664265
Coord C2 exon
chr25:19664266-19664291
Length
407 bp
Sequences
Splice sites
5' ss Seq
AGTGTTAGT
5' ss Score
-4.97
3' ss Seq
AAGTGTTTAATAGCTACATGCCA
3' ss Score
-17.94
Exon sequences
Seq C1 exon
GAGTACCAGCTTACAATTGGACTTAAAAGTTGGATGATCTGGGCTGCGTATTTCTTCACATTCTTCTTTTTTTATATCTTTATTGTCTCTATGATATGTGTGTTACTCTTTGCCAAGGCAAGT
Seq A exon
GTTAGTTTCATGCTGCCCAATAGAAATGAGTCATACATGTACTATTAGGATTTTAGTAGCTACTAGAAATTTTAAAAAGGAAAAGGTGAAATTATTTTAATAATGTGTATTATTTAGCCAATATACACAAAATATTATTTCAGTATGCAACCCATTTTAAAATTGAGATATTTTACATTCTTTTCTGTACTAAAACTTATAACTCCAGTGTATATTTCATATTTAGAGCACATCTCAATTTGTACACTGTATTTTCATTAGAAATACTTCATCTGTATTTGACGCTGCTTTATCTTTCGAGTTTAAGTTAAAAATAACTAAAATTCAATGACAATAAAAAGTCAGCTCCTCAGTCACACTAGCTACATTTCAAGTGCTTAATGTTTCAAGTGTTTAATAGCTACATG
Seq C2 exon
CCATATATGGCTGTTACATCTAACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000035915:ENSBTAT00000050409:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(15.4=100)
A:
NA
C2:
PF126982=ABC2_membrane_3=FE(3.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]