BtaINT0007086 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MNP3]
Coordinates
chr18:57652039-57653160:+
Coord C1 exon
chr18:57652039-57652313
Coord A exon
chr18:57652314-57652463
Coord C2 exon
chr18:57652464-57653160
Length
150 bp
Sequences
Splice sites
5' ss Seq
AAGGAAGGT
5' ss Score
2.1
3' ss Seq
AGATAACTCATATGCAGCAGAAA
3' ss Score
-2.05
Exon sequences
Seq C1 exon
GATGGAAACCTTTCAAATGTACAGAGTGTGGCAACACCTCTAATCAGAATTCAAAGCTTAGTCAAGATCGGCAAATCCACCCTGGCAAGAAACCTTACGAATGTAAGGAATGTGGAAAAGCATTTATGTCTTGCTCACATCTTAGTCGACATCAGCGAATTCACACTGGGGAGAAGCCTTATAAATGTACAAAGTGTGGCAAAGCCTTTAATCAGAACTCAAATCTTACTCAACATCAGCGAATCCATACAGAGCAGAAACCTTACAAAGGTAAG
Seq A exon
GAAGGTGGCAAAGCCACTTTTAGGTGTTCACATTTCAGTCTACATCAGCGAGTTCATGCAGGGGAGAAACCAAACACATGTAAAGAATGTGGCAAGGTGTTTCCTTGTAGCTTACGTCTTACTCAACATCAGATAACTCATATGCAGCAG
Seq C2 exon
AAATCATACAAATGTACAAAGTGTGGCAAAGCCTTTAATCAGAAGTCAAATCTTACTCAACACCAGAGAATTCATACTGGAGAGAAGCCTTATAAATGTAAGGATTGTGGCAAAGCATTTAACCAGTGCTCAGGTCTTACTTACCATCAGAGAATTCATACTGGAGAGAAGCCTTATAAATGTAAGGATTGTGGCAAAGCATTTAGACAACGCTCATATCTTACTAAACATCAAGTAATCCATACTGGAGAGAAATCTTATAAATGTAAAGAATGCGGAAAAGCCTTCAGTCACTACTCAACTCTTGCTAAACATCAACGAATTCATACTGGAGAGAAGCCTTATAAATGTAAGGATTGTGGCAAAGAATTTAACCAGTGCTCAGGTCTTACTTACCATCAGAGAATTCATACTGGAGAGAAACCTTATAAATGTACAGAATGCGGGAAATCCTTTAGTCAGAACTCAACTCTTACTCAACACCAGCGAATTCATACTGGGGAGAGGCCTTATAAATGTAAAGATTGTGGCAAAGACTTTAGCAAGCACTCAGGTCTTACTTACCATCAGAGAATTCATACTGGAGAGAAACCTTATAAATGTACAGAATGCGGAAAAGCCTTCTGTCACCACTCAAGTCTTATTCAACACCAGAGAATTCATACTGGAGAGAAACCTTACAAATGTAAAGAATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000037699:ENSBTAT00000022417:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.185 A=NA C2=0.043
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(55.6=16.3),PF134651=zf-H2C2_2=WD(100=25.0),PF134651=zf-H2C2_2=WD(100=28.3),PF134651=zf-H2C2_2=PU(53.1=18.5)
A:
NA
C2:
PF134651=zf-H2C2_2=PD(40.6=5.6),PF134651=zf-H2C2_2=WD(100=11.2),PF134651=zf-H2C2_2=WD(100=11.2),PF134651=zf-H2C2_2=WD(100=11.2),PF134651=zf-H2C2_2=WD(100=11.2),PF134651=zf-H2C2_2=WD(100=11.2),PF134651=zf-H2C2_2=WD(100=11.2),PF134651=zf-H2C2_2=WD(100=10.3),PF134651=zf-H2C2_2=PU(90.9=8.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCACACTGGGGAGAAGCCT
R:
GCACTGGTTAAATGCTTTGCCA
Band lengths:
246-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development