BtaINT0007233 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G3X7M8]
Coordinates
chr16:55728982-55730266:-
Coord C1 exon
chr16:55729980-55730266
Coord A exon
chr16:55729555-55729979
Coord C2 exon
chr16:55728982-55729554
Length
425 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
AATCTGCTGATTCCCCACAGGAA
3' ss Score
9.51
Exon sequences
Seq C1 exon
ATGAGTATCCAGAACCCCCTGAGACTCCTGAACCTGGCAGGGAAGAGCCTACTAACTGATGAGGCCTTGACCATTTCTACCCTGGAGTATCTGCCCATCGAGCTCTTCCCCCCACTCTTCATGGAAGCATTCTGTGGAAGACACAGAAAGACCTTAAAGGCCTTGGTTCAAGCCTGGCCCTTTGTCCGCCTGCCTCTGGGGAGCCTGATGCAGACACCTCATCTGGGAACCTTACAAGCAGTGCTGGATGGACTCGATGTCCTGCTCACACAGAAGGATCATCCAAG
Seq A exon
GTGAGTCAGATGCATGTAACCTGGTAAGAGATGGGCAGTCCCGAAGAGACAAGTGACAGTAGGAGAGTAAATGACAAATGGATGGACCAGTGGCTTCTGATGATGCCAGTGAAGAAACAGAGACTTGGTCATTGCTGAGTTCACTTTGCTGAATGCCTTCCAGCAGTGCAGGTGTGCCTAAAATGCAAGGAAATGTGAAAGTACATGCCCAGCCTCCTCTCAGGGATGCCTAAGGGTACTAGAGTAGAAAGTTAGGGGAAATGGCAAGGGAAAGGAGATGGAGGGATGTGAGGCAGAGAGGGAAGAGGGCAAGGAAGAAGGTGATGTCAGGAATGTGAAGTAAAAGCTGAGGTGCAAAGTCAGAGTGTTGCCTAATTTTGTGTGAATCTAAAAACTATAGCTGCCAATCTGCTGATTCCCCACAG
Seq C2 exon
GAAGTGCAAACTGCGTGTGCTGGATTTAAGGAATACTGGCCAGGACTTCTGGAGAATGTGGTCTGGATCCAGTGTCCATGTGTCCTCAAGCTCATCAATGGTACCAATGGCTGAGGATGGGTCAAGGATCGAGAAGCCCTTGGCTCCCTTCGAGGTGTTCACAGAACTTCACCTCAAGGAAAGAACCATGAATGAATTCCTCACTTACCTCCTGAAGTGGGTAGAGGAGAGAGACCCTTTCATACACCTGTGCTGTAAGAAGCTGAAAATTGTTTCATTTCCCATGGATAATATTATGAATGTCCTGAGCATGGTGCAGCTGGACTGTATCCAGGAGTTACATGTGAATTGCACCTGGCATCTGTCCACTCTGGCCATGATTGCTCCTCTCCTGGGCCAGATGAGCAATGTGCAGAAACTGTTTGTCTCCCACATCCATCTGCCTGATCCTGAGGAGTGGGATGAGCAGCACATTGTCAAAATTACTTCTCAGTTCCTGAGGCTGCACCACCTCCAGGATCTCCATCTGGAATCCCCTTTCTACCTTGAAGGCTGCCTGGACCAGATGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038000:ENSBTAT00000038910:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGATGTCCTGCTCACACAGA
R:
CTGCACCATGCTCAGGACATT
Band lengths:
353-778
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development