BtaINT0007413 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1ML60]
Coordinates
chr23:25573571-25577749:+
Coord C1 exon
chr23:25573571-25573672
Coord A exon
chr23:25573673-25577467
Coord C2 exon
chr23:25577468-25577749
Length
3795 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGAA
5' ss Score
6.33
3' ss Seq
CTCTGCCTTTTCTCTCCTAGTGG
3' ss Score
10.12
Exon sequences
Seq C1 exon
ACCCCAGCAGGTCAGATTTGCTAAACAAGTTCTGGCACAAAGTACTTTTGTTTTGTTGTTTTAAGAAAAATATGGTTTTCTCAATTTGGAAATGCAGAAAAG
Seq A exon
GTAGAAGTGCATTGAGATCATGGTTTTAATCTCCTTGAAACTATTCAGAAGCTTCCCATTACATTTAGCATAAATTCAAATTTCTAACATCACCTACAAGCTTTTAAGCACTCGGTTCCTGTGATTTTTCTAGTGGAATCTTTCAGTCTCCATCCTCAATCTCTGAGCTTCAGTGAACTGCTTTTATTTTTATTTTTTCTGGTTTCATAGAGAAGTACATCTCTTTTAAGCTTCTACACATGCTATTACCTTTACCTAAAATATGCCTCCCTTTGCCCCCAGACATACACACACCTCCTCTTCCTCTAGCTCATATCAACATAACCTTTTAGCTCACATCTTAAATGTCATTCTTCAGGAACTTCTGACAATCTAACGTAAGTATTCTTTGTTTTAGAACTCCACACTTTTCTTCTGACATTTCTGATTCCCGTGTAAAATTAATCCTCTTTTGGTTGGTTTTGTCCATCACTTTCATTAAATTTTATGCTCTTAGAAGGTAGGAGCTTCCTTGGTTGCTCAGGGGTAAAGAATTGCCTGCCAATCTTTCTGAAACGTCTTTTAGGTCTAACTTTATTCATTTTTTGGTTTTCTTAGGATGTATTATTTTTACATGGTTGAAATGATTTTGAAATCACCTTCCAAAATTATAATTTTTTTTACTTATGGCAGAAAGTGAGTAAGTAAAGAGCGTCTTGATAAAAGTGAAAGAGAAGAGTGAAAAAGTTGGCTTAAAACTCAACATTCAGAAAACTAAGATCATGGCATCCAGTCCCATCACTTCATGGTGAATAATTGGGGAAACAGTGAGAGATGTTATTTTTGGGGGGCTCCAAAATCACTGCAGATGGTGACTGCAGCCATGAAATTAAAAGATGCTTGTTCCTTGGAAGAAAAGCCCTGACCAACCTAGACAGCAAATTAAAAATCAGAGACATTACTTTGCAGAAAAAGGGCTGTCTAGTCAAAGCTATGGTTTTTCTAGTAGTCATGTATGGATGTGAGAGTTGGACTGTAAAGAAAACTGAGCTCCAAAGAATTGATGCTTTTGAACTGTGGTGTTGGAGAAGACTCTTGAGCATCCCTTGGACAGGAAGGAGATCCAATCAGTCCATCCTAAAGGAAATCAGTCCTGAATATTCATTGGAAGAACTGATGTTGAAGCTGAAACTCCAATCCTTTGGACACCTGATGCGAAGAGCTGACTCATTTGAAAAGACCCGAATGTTGGGAAAGATTGAAGACAGGAGGATAAGGGAACAACAGAGAATGAGATGGTTGGATGGCATCACCCACTCGATGGACATGAGTTTGAGCAAGCTTTGGGAATGCTTCCCTGGTGGCTCAGAGGATAAAGCATCTGCCTGCAATGCAGGAGACCTGGGTATCCCTGGGTTGGGAAGATGCCCTGGAGAAGGAAATGGCAACCCACTCCAGTATTCTTGCCTGGAGAATCCCATGGACAGAGGAGCCTGGCAGGCTACAGTCCACAGGGTTGCAAAGAGTTGGAAATGACTGAGCGACTTCAGTTTCTTCTTTTCTTAGGGAGGCCTGGCATGCTGCAGTCCATGGAGTCACAAAGAGTCAGACACAACTGAGTGACTGAACTGACTGACTTAACATACTGATGTTACTATTTTTATAATGCTAGTTGTATTTAAGTAGTTTAATGTTACTTCTTTTTATAGTGGGAACATTTTACCTCACATTTCCCTTTGTTAGATCTTTTTCAGTATTGCCAAATAGTTGACATTTTATATCATTTTGTTTTTATTTTATGTCTTTAATTTTTAAGGTTCCTGAATATTTTCACATATTTATTGGCAAACATCTATTACAACTTTAAGAATTATCTAAAGTTTATTATCTCTTAGATCTTTGTGTTTTTCTCAGTGGCTTTATGGATTCTCTGTGCATTATAATAAACACTTTTCTGGTATTCGATTCAGTATTTTATCTTGTTTATAGTTTATATTTTGATTCTGTTTGTTATTTTCCATGTTAGAAATTTAAACATTTATATTTAATAAAATTACTGCAAAATTGTTATTGAAAATTTTCTGTCAGTCTTACATTTGACATTTTGTGTTATTATAAAAATGCTTTTCCAACAGTTTTCACCTTAAAAAAAAATAATTGTATTTACTGTCGCTGGTGGTGTGGGGGTCATCTTGGGCACTAAGCACACATATTAATGAATCTCGGACTCTACCCTTAGCTCAAATGTCAGCTTAAAAAAAGAGAGACTGTTAATAAAATGATAAGTTCAGTAAAAAGACTGCTTATTTTGCAAAGGGGGCCTCGTTGGTGGCTTATACAGCAAAGAATGTGCCTGCAATGCAGGGGACCCAGGTTCAAACTCTGGGTTGGGAAGATCCCCTGGAGAAGCGAATGGCTACCCTCTCCAGTATTCTTGTCTGGAGAATTCCATGGACAGATCTGCTGTCCGTTGGGTTGCAAAGAGTTGGACACAACTGAGTGACTAACACTTTTACTTTCACTTAATTTTGCAAAGGAGAGAACTTGATTAACTGAGTGTAATTGCAGGTGGCTTTTTTTTTTTTTTAAATAAATGACTATTTGCTCCTTTCCTTCTCCTTCAGAGCTCAGGCTTTTCTTGGGACTCAACTCATAAAGCTTCAGAATCACCTTTGTCTATTCCTGTTTCCCAGAGTTAGATCACTTTCTTGAGTGTTCTAATGCTAATGAGTGTAGCATTGTTAGGAATTTTTTTTCTCCATCTTCCCATCTACCTCAAGCTGTTCCCCAATTATCCACACTGCTTTGAATCACGTTTTCTCTCCAAGTAAAAGAAGATAGCAAATATCTAAAGTATTTTGAAAACTAAGTTCCAGCCATTGTTTTAGGTGCATTAATCCTCACACAGCCCTAATACACATATTAGTATTATTATCCCATTTATAGTTGGGCAAAGCAGTGCAAGTATTTGAACTAAGGCACTCTAGCTCCAGAAATCATGCATTAAGTAATAAGTTATTGTTAAATGAAATATTTCCTGCCACATGAGTGGGCAAGAAATGTCACAGCTATCTGCAATTCAGGCCCTTCAAATGTGGATTTCTGAGCCACGCTGACAAGCAGTGCCACTCTCTACACAAGGAACTTAAGGATGTCACAGTCATCAGCGATTTCAGCTCTCCAGTGTGAGTGGGAAGGCTCAAAGGGAATTTAAGAAACAAAACTATCTTTGTAAATATGCAGGATACTGGCCTCAGATAGCGGAGATGCATATGAAAGGAATGACTTCAATAATCCCAGATTCTTGCATCTTCCCATACATAGAATAACACTAAATTTTTGGTGTTTAGACTGCCTGTCCTCTTCGTTGCAAACTTGTATATAGCCTGACTCCCTCTCCCACCTCCTCGGAACAGTTTTCTCAGGGCCACTGAGATTCCATCTCCCAGGCTCAGATACCTTATCATTTCCACCAAATAAAATAGCTCTCTACTTACAGGTTGTGACTAATTTTTTAGTCAACCCTAAATACCTTGCAAAGATTGGTAAACACATCAGTTCAATAATGAATAATTCTTTGGGGCTATGAAAAAACAAAACAAAATAAATTTCCTCCACATCTCTGAAATCTAACAGTCTCGTGTTGTTAAGAATTAAAGTCTAGGCTCATGGTTCTAATTCCTGTTGGGTCACATGGCCAGTTTTCAGAAAGGTCTGCCAAGACTGGAGCATGGGACTAGAGACTGGGGGCAGAAAGGCAGCCAGGGGGATTTACTCTGCCTTCCTCACTTATTCCCTCTGCCTTTTCTCTCCTAG
Seq C2 exon
TGGAGCCTACAGTGACTGTATATCCTGCAAAGACCCAGCCCCTGCAGCACAACCACCTCCTGGTCTGCTCTGTGAATGGTTTCTATCTGGGCCATGTTGAAGTCAGGTGGTTCTGGAAAGGCCAGGAAGAGGAGGCTGGGGTGATCTCCACAGGCCTGATCCAGAATGGAGACTGGACTTTCGAGACTATTGTGATGCTTGAAACAGTTCTTCAGAGTGGAGAGGTCTACACCTGCCAACTGGAGCACCCCAGCTGGAGAAGCCCTATCGCAGAGGAATGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038397:ENSBTAT00000022181:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0765410=C1-set=WD(100=87.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]