BtaINT0007438 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MI18]
Coordinates
chr5:101229657-101230618:+
Coord C1 exon
chr5:101229657-101229766
Coord A exon
chr5:101229767-101230456
Coord C2 exon
chr5:101230457-101230618
Length
690 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
3' ss Seq
TTTCTCTTTTCTACTTCTAGGTT
3' ss Score
12.27
Exon sequences
Seq C1 exon
GGTTGGAATTAACCGGACATGGATCAAGTGAAATCACAAACACCTTAAGCAAACTGAAATTTACGAAAGTGCATTCACATTACAGACGTGGGCTTCCTTTCTTTGGGCAG
Seq A exon
GTAAAGTTTCTTTTCAATCTAAACATATTTGGGGGCATATGACTTCTAGGAAAACCAATTTTTATATCAAAACTTATCTTTTAAATTCATCAAAATTCTTTTGTTATACAAAAGCAAAATTTATTATAAAAACAAACATTTATTTAGAGTGAGTAAAGAAATTATAAAAACTTAAAAGGCAAATACCTTATATAGGGCTTCACTGGTGGCTCAGCAGTAAAGACTCTACCTGCCAAGCAGGAGACCTAGGTTTGATCCCTGAGTCGGGAAAATTCCCTGGAGAAGGAAATGGTAACCCACTCCAGGAGATCCCATGGACAGAGGAGCCTGGCAGGTTACAGTCCATGGGGTCGCAAAAGGTAGTACACAACTGAGAAACTAAACAGTGACAACAAACACAAAAAGAAGCCTTATAATGAGATACAGAACAACAAAGATGAAGAAAACTGGGGAAGGTAACACCATGAATCTACTGTTGGCAGTTCTCAATTAAACACTCATAAGTTATCTAAACAAAAACATCAAAAAGAAAAATATTTTACAGCCCAGAAAACAAATCTTACTTTTATATTCTAAGATCTTCATTAGATGACAATGGCCAAGAAGTGAACACAATAGAGTGGAAAATGTTATTGCGATATACCACCTGAAATCAGCTTTCACTTTCTTATTTCTCTTTTCTACTTCTAG
Seq C2 exon
GTTCTTCTAGTCAATGAGAAGGATCAGCCAATCCCCAATGAGACTGTAGTGGTCAATGTGGATATGTTTCAGTATAGTGCCAGATTTACTACAAATGAGCACGGTTTGGTGAACTTTTCCATTGATACCAGTAACTTCACATCTTCTTTCATTTCAGTTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038461:ENSBTAT00000037743:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.027 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTGGAATTAACCGGACATGGA
R:
CCCAACTGAAATGAAAGAAGATGTGA
Band lengths:
272-962
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]