BtaINT0007439 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MI18]
Coordinates
chr5:101230457-101231455:+
Coord C1 exon
chr5:101230457-101230618
Coord A exon
chr5:101230619-101231173
Coord C2 exon
chr5:101231174-101231455
Length
555 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGT
5' ss Score
9.65
3' ss Seq
ACCTTTATTCTATCCATTAGGTC
3' ss Score
8.79
Exon sequences
Seq C1 exon
GTTCTTCTAGTCAATGAGAAGGATCAGCCAATCCCCAATGAGACTGTAGTGGTCAATGTGGATATGTTTCAGTATAGTGCCAGATTTACTACAAATGAGCACGGTTTGGTGAACTTTTCCATTGATACCAGTAACTTCACATCTTCTTTCATTTCAGTTGGG
Seq A exon
GTAAGTGGAAATCTAAATACAAAATAAGACACAAAAAGTTCTCTCAGAAAGCTTTCATTTTAGACTTTATGACATGATCTAGTTTCAGGAGACATTTATTAAACCATCTTGATAGTCCCTTGAAAATCCAACATTTTTATAGCTTTATTACAAACTAGATTTTAGTTGTTTCTTTGGTAAACCACTATTTTCATTTTGTGTGAAATATTCTAATGTCCTTATGCAATGTACAACCATAAGGGTATTAAGAAAAAGTTATTGATCTTAATTATGAGTGAATGTGACTAAATTCATACAGTGTAGCTTTAAATAAACTTAACGGAAAGTTGTTTATAGATTATATTTTATTTTGGAAGGCAGCCTATAATGAAATCAAGTAAGCATGGGTCTTAAAAAATCTTCAGCTAATGACAGAGTGACTTTACATATATATAAAATGTTTATATATATATATATAATGTTTATATATATATATAAAATGTTTATATATATATATATATATATATAAAATGTTAATAAAAATAACTTACTTAAGACCTTTATTCTATCCATTAG
Seq C2 exon
GTCATTTACAAACAGAATAGCCACTGTTTTGATAGCAGGTGGCTTGAAGAATCTCACATACCAGCAACGCACACTGCAAGTCATATTTTCTCCCCAAGCAAGAGTTACATTCAGCTTGAACCTGTGGCTGATACTGTGATCTGTGGGAAAACACAGGAGATTCGGGTGCACTACATCCTGAATGGACAGATTCTGACAGATGAAAGGGAATTAACCTTTTATTATTTGGTAAGACTAAAAGCCACTGTAGCTCTTCCTAATTATATAAACCCTAAAAGATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038461:ENSBTAT00000037743:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF077039=A2M_N_2=PU(40.1=60.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGGATCAGCCAATCCCCA
R:
TGTCAGAATCTGTCCATTCAGGA
Band lengths:
344-899
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]