BtaINT0007444 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MI18]
Coordinates
chr5:101241310-101244471:+
Coord C1 exon
chr5:101241310-101241459
Coord A exon
chr5:101241460-101244306
Coord C2 exon
chr5:101244307-101244471
Length
2847 bp
Sequences
Splice sites
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
3' ss Seq
TCCTTTGTTCTACTTTGCAGGTG
3' ss Score
11.62
Exon sequences
Seq C1 exon
GTAAATCTGAGCTTCTCCTCAGCCCAAGGCCTCCCAGCCTCAAACACCAGCCTGAAGATCACAGCCGCTCCTTACTCTCTCTGTGGCCTCCGAGCCGTGGACAAGAGTGTCCTACTAATGAAGCCTGAAGCTGAGTTCTCACCTCAGTCA
Seq A exon
GTGAGTCCCATCTCAGTCTTGGATATCAGAAAATGCACACATGATATGACCATTTCTGGAAGCTGAAAATTATACCTGCAAAGGACAAGTTCTTTAGAGTGTCAGGAATAGTGCACTAAGTCACATAAGAGTTTGAATTCTACTTGTTTCTGAAAAAGACATTGCACAAGATGCTTTCCACAGATAATCTCACTTCATTGTCTGCTACAATGTATCAAAGACTGAGCAGTCTTGCTCACCTGTGCCTTACACAGTCCTCACATGTAAAAGATGCTCAACACCTTTTTAATGAGTAAAGAAATGAATAATTCCTTAAGGAGAGCATTATTACCTTCATTTTATGAACTAAGAAAACACAGCAGAGTTAGATTAAGCAACTATAGAAACAATGCACCAAAAAATATATTTTAAAGGTAGAACTTGAACCAAATTTTATTCAATGCTATGTCTAACACACTACAATTCCAGATAGTATGTGAAATGTCAAATTTTTAAATCTTCTCCAAAGTCCAGGCACTTATTTGTTTTAAGTATGGACAAAAGAGATTCCAATCAAACTTGTCTTTTAAACATGTTTCTTGGGACTTCCCTGGTGGTCCCATAGATCAGACTCTGCTTCTACTGCGGGGATCTCAGATCCCTGCTCCGGGAATTAAGATCCCATATGCTGCGCAGCACAGCTAAAAAAAAAAAAAAAAAGACGTTTCTTATAATGAAAAACTTGTAAGAGTTCAGTAGTTTTACAGTCTTCATTGTCCATTTATTTATTTAACAAATATCCATGGCATCTTGACTACAGCATAGTGCTCTGAGAATAAGAGTTCTAATGGTGAAAAATAGATGTGGTCTTTGACCATTTTAGATTCATTGTCTCATGTGTTAAGCAAGCAAGCAACAAAAACATATCAACATATAGTAGTTCTAAGTGTTGGTAAGTATCATTTAAGGAATAAACAGGATGTTGAGATGAAGAAAACAGTTGAACAAGTTTTAATGTAGTGATTGGGGATATCTTCTTGCATCGTCAGATAACAGGGGCAGGGGCAGGGAATGCAAAGAATGAAAGCAGCATGAAAGTCCTGAGGCCAGAACAACAGTGTTTCCAAAGGAAATGGTAATGACCTTACATAAAGTGGTGAGAGAAAAGGATGGTAGAGGCAGTAGGTGGAATGAAAAGTCAGGAAGATCATGAGGAGGACTGTGAACTTGGAGTGGAATTAGGCATTGACAGCAAAGTGAAACGCGAAAGTGAAGTGGCTCAGTCATGTCTAACTCTTTTGTGATCCCATGGACTGTAGCCTACCAGGATCCTCCGTCCATGGGATTTTCCAAGCAAGAGTACTGGAGTGGGTTGCCATTTCCTTCTCCAGGGGATCCTCCTGACCCAGGAATTGAATTGACAGCAAAGGCAGTGATATATCAGTGAGGAGTTTAAAGCAGGAGAGCAACGATTTAGATTTACCTAGTTATGAAGATCCTGTTTGCTGTTCAGAGTATGGGAGCAAGAATGAAAGCGCGGAAATAGGAGGCTATGGTAGCAGCTTAGATAAGAGATGACAACAGGTCCACATGGAGTCAGTGTGTCTTTAACAGCCTGAATACTGTACGACTGAGCAGGTGGCCTTATGATGAGGCTTCCCAGGTAAAGAACCTGCCTGCCAATATAGAAGACATAAGAGATGCGGCTTCTATCCCTGGAATGGGAAGATCCCCTGGAGGAGGGCACAGCAACCCACTCCAGTATTCTTGCCTGGAGAATCCCATGGACAGAAGAGCCTGGTGGGCTACAGTCCATAGGGTCACAAAGAATCCGACACCACTGAAACAACTTAGCATGCACGCACTAGGCAAAAACTTAACTAGAATGAATTTATTTCTATGTTACGTTTGCATCTAGTTTCCTCCTGAGTTAAACTTGGTCCTAAAGCAGTAGAGTGGGGAAAAAAAAAAAAAAAAAACACTTGGTAAGAATGTAATCACATAAAGTGGGAAAAGGAAATATATTAAGTATTTACAGAGGTTGTTTCTAGGTGATGGATATGAAGGACTTCTATTGTTTCATAATGCTTCTCTGTACTCTCTTTTTGCTTTCTTTTAAAAGTTGGACCTAGGGTCTGTCAAACAGAGTGCAGTATGTCAGAAAGAGAAAACCAAATATCTTAACACATATATGTAGAATCTGGACAAATGGAACTGATGAACTTATTTCCAGGGCAGGAATAGAGACGAAGATAGAGAGAATGACATATAGACACAGGGTGGGGAAGGGGAAAGTGGGACAAATTGGGAAATTAGGACTGACATATATACATTACCATGTGTAAAATAGATGGTTAGCAGGAACCTATTGTAAAGCAGAGGAAGCCCAGCTTGGTGCTCTGCTATGACCTAGAGAGGTGGGATGGGACGTGAGGTGGGAGGATGTTCCAAGAGGGAGGGGATACATGTATATATATAGCTGATTTGCTTTGTTGTATAGCAGAAGCTAACACCACATTGTAAAGCAATTATATACCAATAAGTATAAATAAAATTCAAAAGATAAATTCAAAAAAAAAAGTAGGCATTTGGGCTGGGAGACAAAGAAACTTGAGTTTTAGACTTACTCAAGCTAAATGACCTCTGAGTCTTTCATCAATGAATTTGATTTCTTTATACATTATTTTCTTTCATACAACAACAGGATTGGGATCCATAACCTTTGATATCGCTCCATGATTTCTGTGTCATGTTTTACAATGTTGCTATGGGAGTGTTAAATAAACACCAAGATCTCTTAAACTCCAGATTGAACATTATCTCACTTTATAAAATAAATAACAGTTTTTCCTTTGTTCTACTTTGCAG
Seq C2 exon
GTGTATAATTTGCTATCGGTAAAGAAAATCTTTAGCATGGGATATAGAGGCCCCATGAACGAAGATAGGGAAAAATGCATCAACGCGGAAGACATAACTCACAATGGAATCATTTACATTCCAAAGCAGTTCATCAGTGATGACGATGCTTACAGTATCTTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038461:ENSBTAT00000037743:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.018
Domain overlap (PFAM):
C1:
PF077039=A2M_N_2=PD(27.5=78.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]