BtaINT0007445 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MI18]
Coordinates
chr5:101244307-101246101:+
Coord C1 exon
chr5:101244307-101244471
Coord A exon
chr5:101244472-101246028
Coord C2 exon
chr5:101246029-101246101
Length
1557 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATT
5' ss Score
8.88
3' ss Seq
AATAATTATTTTTCTTCCAGTCT
3' ss Score
6.79
Exon sequences
Seq C1 exon
GTGTATAATTTGCTATCGGTAAAGAAAATCTTTAGCATGGGATATAGAGGCCCCATGAACGAAGATAGGGAAAAATGCATCAACGCGGAAGACATAACTCACAATGGAATCATTTACATTCCAAAGCAGTTCATCAGTGATGACGATGCTTACAGTATCTTTGAG
Seq A exon
GTAATTCCTTTTCCTAAAAACACAACCTAAATTGATCTCTACCTCATCATCAAGATGGAGAAGAGCTCTAGAATCTGATCTTCCTCTCAACCACCAAAAGACAAAGCTATGATTAACAGAAAAATATTGAAAGGTCAGAGGCATGGAGAACTTTGTACACACACAGACAGTCAGTCATGAATTTCTCTGGCACTTTAAGAGCAAGGGGTATACTTTTAGGGCCCACAACTTTAACCAAGTTGATCCCAAAGCTAGTTGTCACCATCATATATCCTCTCAGTGATTCTCAGAGGTTCCAATATGTGAGAAAAACAAAGCAAACATTTCCACAGAGCCTCTGACATCCTTAAAAAAAGTGAATACTCTGTTGGCAACCACTGTAACAGTCATTTCACAATAAATGAATCAGCAAATGACTGAATACATAAAGTAAAATACTGCGGCCAACAGTTTCAGTGCAGTAAAATTTCAGGTGAATTGAAAGTAGCTGTTCATAGAGAAGAATTTGCAAAACTTGGAGTAGAAACATTAGCATGCCTTAGGTACATTAGAGCAAATGTGTATCTTTAACTGCAGTTAGGCAGAATTATGAAAGGGAAGTTTTTCCGGGTTGTGAGATTAAATCTTAGCTCCACCAAAAAGGACTGAAAACACTCGCTATACCTTGAGGAAGCCATGTGTCCTACTGCTGTGGAGGTCTGCAGCTTAGCTGAGAGCAGTTTAAACCTCCCTTTTCTGGAGCCTCCGGAATCAGTTGGTGGTGGAGGGAGAAAAAGAAGGCTCTTTATTAACTGTTAAATGTTTCTTTCTGACTTCTTTCTCCCTGTTCCATACCACTGGCACCACTGACAACGGTGCCTCAGAGTCCCACAGCTTCCCGAGCACTCTAGAGCACAGCAAGTAGTATTTAACTGTGACTAATATTGAAGAGGAAGTCTGTAGCAGGAATCAAGGAATCAAGCTACTGTGGATGTCTGAATGGGTGTTTTGCATGCAGACTTTCAGTATACTTAAAACTGAGAAAGAAAAAAACGAAAGGATAAATCACAAAAGGGATGAGTTGAACACAGATATTCAGGCAAAGGCATATTTCCCAATAAAAACAAAGCAAAGTATAATGACTATGAAGAAAAATCTCCAATATGCAACCCTACAATTTCAAATGAAAAGAAACGGAAAACTATTCTCTGCAACAAAGTTAATGTGTGGTTTGAGGCAGGGGGAGGAAGAGAAGAAAAACATCCAAAGCTAAAACACTCAGTTTCTTGGAGGCAAAAGATAATTAAAGGGGCACTAAGCATATAGGAGACAAAATTCAGAAATAGGAATCAGAAGTAGATTCTAATCCCAACTCCCATTCATCAACTGGATGATCTGAACTCTCTGTGACCCCATTTTCATTTTTATAAAATACCTCTCTTCTCCATTGGGTGGAATTTTCACGATAATCCTATGAGTTCTATGTATAATACTAAGGGTATATAATACAGATGTAAGAAAATATCCCAGTCTCCAGACTGGATTGCCAATATGCTTTAATAATTATTTTTCTTCCAG
Seq C2 exon
TCTGTAGGATTAAATATTTTTACCAACTCAAAAATCCACAAGCCACATTTTTGTCAGCCGCTTCCATATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038461:ENSBTAT00000037743:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTAAAGAAAATCTTTAGCATGGGA
R:
CTGGATATGGAAGCGGCTGAC
Band lengths:
222-1779
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]