BtaINT0007446 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MI18]
Coordinates
chr5:101246029-101247181:+
Coord C1 exon
chr5:101246029-101246101
Coord A exon
chr5:101246102-101247160
Coord C2 exon
chr5:101247161-101247181
Length
1059 bp
Sequences
Splice sites
5' ss Seq
CAGGAATGT
5' ss Score
1.62
3' ss Seq
GTGACACCCGGGAAGCCCATAAG
3' ss Score
-17.63
Exon sequences
Seq C1 exon
TCTGTAGGATTAAATATTTTTACCAACTCAAAAATCCACAAGCCACATTTTTGTCAGCCGCTTCCATATCCAG
Seq A exon
GAATGTCTATGAACTATGGAGGTAAGGGTGAAAGTTATTTATCCGCTAAAATAATAGAAGAAAAGTAACGTTTTGCTAGGTTGGGATAAAAAGCCATTTTTTTAAGTACTGACTGTTATGACTCTGCAGCAATTTCTTGGTAAAATTTCCTCAAACAACTTTTTTCTCTAGAAAAAAAAAATGAAACATTATAATTTCTCTATCTCTCTCTGATCAAAATTAAATACAGTCTTGGTACTTTAAATCCTCTTTATCTACTGTGCCTTCAGTATCTGAATTAGTCAAGATAAGATAAATTATACCATCTTAGCAAACAAACCCCCACATCTCAGAGTCTAAGCACCTAACAGTTTATTTTAATGCTCTCACAAAAACTTCTTGTGAGGCCAGGAGCTGTTCAAAACACCTCCATTGGTCAGAACACTGACCAATCATTGTCAAGGAGATTCATTCAGCTTTCCTCTTGTGACTCCATCTCCAGCATGCCTTTCAAGGTTACTATCTTGGGGGAGAAGGAGTAGATATGCACATGACTTTACAGCCAGCTGTGGAAGTGGCACAAATCACAGTGCCCTACCTGCAAGGGATCTGAGAAATGTGAACGATTACATGGATATTATTTGCCTCTGTCGTTCTTTTATGGAAATCAGTGATTCTGACAAATTGAATAATAGAATAAAATAATTCAGCTTTTGGAAGACATACTGTTAGTCTCCTTGTGTATCTCAAGTATACATAGAAAAGAGGAAAAGTCAAAAAGATTCTATTTTCTCTTCTGCTGCTAACAGAGACATTTCTCTAGCCATGCTGAGATGCCTACAAATCCTGTTTCCCCCTGTGCTGTGTGCTGAGCTACGTCGCTTCAGTCGTGTCCAACTCTGTGAGCCTATAAACTGTAGCCTGCCAGGCTCCTCTGTCCATGGAATTCTTGAATATTGAAGTGGGTTGCCATGCCCGCCTCCACGGGATCTTCCTGACCCAGGGATTGAACTCATGTCTCTTATGGTTCCTACATTGGCAGGCAGGTTCTTTACCACTAGTGACACCCGGGAAGCCCAT
Seq C2 exon
AAGCAGTATGTGCTGTGCTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038461:ENSBTAT00000037743:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]