BtaINT0007457 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MI18]
Coordinates
chr5:101257067-101258114:+
Coord C1 exon
chr5:101257067-101257154
Coord A exon
chr5:101257155-101257957
Coord C2 exon
chr5:101257958-101258114
Length
803 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
3' ss Seq
TTCTCTTCTTTGCTGAACAGGCT
3' ss Score
8.12
Exon sequences
Seq C1 exon
GTTACCAAAGACAGTTGAACTATAAGCACAGTGATGGTTCTTACAGCACCTTTGGGGATCGTGATGGTAGAAGTCAGGGAAACACTTG
Seq A exon
GTAAGATAATTATTTCCATATGTTCTCTGTAGATCCAAGATGTTTCAAATAACTGGAAATAGCTCTTATCTGATACCTGGACTTACTGTGTAGAAATTTGTTATCCTTTTAAAACCCACATGCACATCATTGCTAGCAGAAGTTCTCACCATTTCATGTATGAAATGTTCTGATAGTACAGTTCTGATAGTACAGTTGTTGTTTAGTCGCTAAGTCATGTCTGACTCTTTTGGGACCCCATGGACTGTAGCCCACCTGGCTTCTCTGTCCATGGGATTTCCCAGGCAAGAATACTGGAGTGGGTTGCCATTTCCTTCTCCAGGGGATCTTCCAGACCCAAGGATAGAACCTGTGTCTCCTGCATTGCAGGCAGATAGTACAATAGATAATAGTAAAATTAGGGTCCCCTCAAGCAGAAATATAAGGCATAAGGTGTCACAATGTGAAATGAGAGAGGAAGAAGTTTCTATATTGTGCATTCAAGAAGGAGAGGAGGCGAAGAACAGAAAGACACTGTGATGTAGTAAAATCATTCAGAAAATGGCAATTTGGGTGAAGGCTTGGAGTCTCCAAAAAACATTTTATGAGAAAAAAAGTATCAACTCTGGAGAAACCAATAAAGTTGAGAGATTTTTAAATAGATTCAGAAGTTTGTTGGACAAATAAGAGTATATTCAGTATTCAAGGGTCATCTCGCCACCAATTTTCTCCATGGAACTGTGAAGCTATCTGGAGGCAGTGACACACAGTGAGCTTTCAAAAGGAGATGATCCGCAGGTCTCCTTCTCTTCTTTGCTGAACAG
Seq C2 exon
GCTTACTGCATTTGTGCTCAAGTCTTTTTCTCAAGCCCAGTCACACATCTTTGTGGAGGACTCGCACATCACAGACTCCCTTACCTGGCTCTCACGGAAGCAGAAGGAAAATGGTTGTTTCCAGCGCTCTGGATCATTGCTAAACAATGCTATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038461:ENSBTAT00000037743:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.033 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(11.3=100)
A:
NA
C2:
PF076789=A2M_comp=FE(20.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAAAGACAGTTGAACTATAAGCAC
R:
GTTTAGCAATGATCCAGAGCGC
Band lengths:
230-1033
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]