BtaINT0007460 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MI18]
Coordinates
chr5:101258499-101259468:+
Coord C1 exon
chr5:101258499-101258573
Coord A exon
chr5:101258574-101259290
Coord C2 exon
chr5:101259291-101259468
Length
717 bp
Sequences
Splice sites
5' ss Seq
ACCGTATGT
5' ss Score
6.73
3' ss Seq
GGTCTTTATCTTCTTTATAGCAC
3' ss Score
7.29
Exon sequences
Seq C1 exon
GGTGGGGTCGATGATGAGGTAACGCTCTCTGCCTATATCACCATCGCTCTACTGGAGATGCCGCTGCTTGTCACC
Seq A exon
GTATGTACCGCCACTCCCAACCTGTACTTGCCTCTAATGTAAGGATGAAACTCGTGGAGCTATGAATCTCTGAGGAAAATGAGTTGTTATTTTCACATTATTTAATATTAGTATATTTCACTGGAGCATAAAGGATGATAGATCCCTTGGGAAGCTGCAAAGAAAATTACCCTCTGGTCAGGACTGTGGTGTTGTGCAAGCACATTGGGGCGTTATATCTGTGGCTAGCCAGGGGACAGTTCATTAGCCTGGTTCAGCTAGCCTAAGGTCTTCCTTCATTTTCAGTAAGTCAGAAACAGAAAAACAAATTTCATATATTAATGCATATATGTGGAATCTAGAAAAGTGCAAGGCAGAAACAGGATTGATGTGGAAAATGAGAACATATGGATACCAAAGGGGAAAGGTGGAGGTGGGATGAAGTGGGAGATGTGGATTGACATATACACACTACTATGTATAAAATAGATAACTAATGGGAACCTGCTGTATAGCACAGGGAACTCTACTCAGTGCTCTGTGGTGATCTAAATGGGAAGGAAATCCAAAAGGGAGAGGATATATGTATACGGAGAGCTGGTTCACTTAGCTGTACAGCAGAAACTAACACGTTGTAAAGCAGCTATACCCTCCCTGCCCACCCCCCCCCCAATTAAATAAATAAGTAAATGGCTGGAACAAGGGAAAACAGAAGCAGGGTCTTTATCTTCTTTATAG
Seq C2 exon
CACTCAATTGTCCGCAATGCTCTCTTCTGCCTGGAAAGGGCCTGGCAATCTGCCTCAGAGGCCCAAGGAAGTTTTGTCTATACCAAGGCGTTATTGGCCTATGCCTTCGCACTAGCAGGAGACCAAGCCAAACGAAACGAACTGCTTGAGTCACTACACAAAGAGGCTGTAAAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038461:ENSBTAT00000037743:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.067
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(9.4=100)
A:
NA
C2:
PF076789=A2M_comp=FE(23.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGGGTCGATGATGAGGTA
R:
TACAGCCTCTTTGTGTAGTGACT
Band lengths:
246-963
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]