BtaINT0007514 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N633]
Coordinates
chr6:85688538-85691467:-
Coord C1 exon
chr6:85691429-85691467
Coord A exon
chr6:85688716-85691428
Coord C2 exon
chr6:85688538-85688715
Length
2713 bp
Sequences
Splice sites
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
3' ss Seq
ATGCATCCTCTCTTCTGCAGGTT
3' ss Score
10.52
Exon sequences
Seq C1 exon
AAATCAACAAGACAGAAACAGACAACTTCCTGAACAATT
Seq A exon
GTAAGTTTAACACATTTATTAAAATTGTATTACCTGAATGAATAAAGTTAATTCTAGATTATTTAAGTTTACTTTGTCAGTATTATGGGGTCAGAATAAAGTTTGATTTATGCACATCTCATGGTGTTTATCTTACCTCTGAAGTACCTTTTATTGCAAAAGGATAAAAACTAGAAGGATTTTGAAATGGATATATGGGGCCTGTGGCAGATGTGTAGTAGAAGTGAATGGTACAGTTGTTAAAGAAAAGGCAAAAATATTTCTTAATGTTCTGATTGCAGATATCTACAATATATCCTCATGAAAACCTTCTAAAGATTGTATAGAAGTAATTTGTACATCGATATTTTTCAGCTAAAGGCAGAAACTTAGTGCTACTCCACACTAAATAAAATCTTGATGTTATTCATCTCATATTATAAAAATTGCTGACAATTATGGGACTGGGGTTCTCCAAGCCAGGCTTCAACAATACGTGAATTGTGAACTTCCAGATGTTCAAGCTGGTTTTAGAAAAGGCAGAGGAACCAGAGATCAAATTGCCAACATCCGCTGGATCATCGAAAAAGCAAGAGAGTTCCAGATAAACATCTATTTCTGCTTTATTGACTATACCAAAGCCTTTGACAGTGTGGATCACCACAAACTGTGGAAAATTCTGAAAGAGATGGAAATACCAGACCACTTGACCTGCCTCTTGAGAAACTTGTATGCTGGTCAGGAAGCAACAGTTAGAACCGGACATGGAACAACAGACTGGTTCCAAATAGGAAAAGGAGTAGGTCGAGACTGTATATTGTCACTCTACTTATTTAACTTATATGCAGAGTACATCATGAGAAACGCTGGGCTGGATGAAGCAGAAGCTGGAATCAAGATTGCCGGGAGAAATATCAATGACCTCAGATATGCAGATGATACCACCCTTATGGCAGAAAGTGAAGAAGAACTAAAGAGCCTCCTGATGAAAGTGAAAGTGGAGAGTGAAAAAGTTGGCTTAAAGCTCAACATTCAGAAAACTAAGATCATGGCATCTGGTCCCATCACTTCATGGGAAATAGATGGGAAATAGTGGAAACAGTGGCTGACTTTATTTTTCCGGGCTCCAAAATCACTGCAGATGGTGACTGCAGACATGAAATTAAAAGACACTCACTCCTTGGAAGGAAAGTTATAACCAAGCTAGACAGCATATTAAAAAGCAGAGATATTACTTTGCTTTGTAACAAAGGTCCATCTAGTTAAAGTTATGGCTTTTCCAGTAGTCATGTATGAATGTGAGAGTTGGACTATAAAGAAAGCTGAGGGCCGAAGAATTGATGCTTTTAAGCTGGTGTTGGCGAAGACTCTTGAGAGTGCCTTGGACTGCATGGAGATCCAACCAGTCCATCCTAAAGGAAATCAGTCCTGAATGTTCACTGGAAGGACTGATGTTGAAGCTGAAACTCCAATATTTTGGCCACCTGATGGGAAGAGATGACTCATTTGAAAAGACCTTGATGCTGGGAAAGATTGAAGGCGGGAGGGGAAGGGGATGACAGAGGATGAGATGGTTGGATGGCATCACTGACTTTTTGGACATGAGTTTGGGTAAACTCTGGGAGTTGGTGGTGGACAGGGAGGCATGTCATGCTGCAGTATATGGAGTTGCAAAGAGTCAGACACAACTAGTGACTGAATTGAAGTGACAGGACTGGGGTATAGGTGGATGAAATTACTGAAAGCACAAATAATATCTTCACCCATATTTTAAAGGTACTGACTCAAGGCACAGTGTTTCTTCCCCCTATGGCAGAATACCCTACCATGATTTGAGAATATATTTAACAGAATTACACGATACCTTTATATTAAAAGATGAAATGAAATGCACTACTCACCAGCTCAGAATATTGGTTAATTCATAGGCTTAACTAAATGTAAAACCAAACAATAATCCTATTACATGGCATATCTTTTCACTACTAGTATTTATTGGGAACTTGTTAGATACCAGTGCTGTGTTAGTCAATAGGGACATAAAATGGATGATTTAATCCTTGCTTAAAGCAGCTTATACTTCAGTGAGACTAGATATATGAGACTCATACATGAACACAGAATTACAAGACAGTAGTTCTCAAACAGGGGCAATTTTGACCCCCCCAAGTGACTAAGTCCTCTTGTGGCATTTGGGTTATCATGATGGTTGGGGAACAGGGATACTACTGGTATCTAATATGTATAGGCCAGGGATCCTTTTAGACATCCTGTGATGCACAAGATGGACCCCCACAACAAAGAATTATCCATCTGAAAATGTCAGAAATGCCAAGATTGAGAAACTCTATTATAAACAATATTCTATTACTAATATTAGATACATATACATACAATTAATATATGTACTAATATATATTAATCTGTTCTATGTAGAGATAAATATATACATATGTATATACATACACAGGCTTCACAGTTGGCTCAGGGGTAAAGAACCCACCTGCTAATGCAGGAGATTCAGGAGACTTGGATTTCATTCCTGTGTCAGGAAGATCCCCTGGAGAAGGAAATGGCAACCCACACCAGTATTCTTGCCTGGGAAATCCCATGGACGGAGGAGCCTGGTGGGCTACAGCCCATGGGGTTGCAAAGAGTAGGACATGGCTAAGCATGCACAACACAGTTTGATGTGTAAAAACAATTGCTAACAAATGCATCCTCTCTTCTGCAG
Seq C2 exon
GTTGTGGGACACGAAGGAACAAAACCCCAGGACAGAGTCTCAGGATTGTTGGTGGAACAGAGGTACAAGAGGGTGAATGGCCGTGGCAAACTAGTCTGCAATGGGATGGGATCCATCGCTGTGGAGCAACTTTAATTAATGACACATGGCTTGTGAGTGCTGCCCACTGCTTTAGAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038520:ENSBTAT00000054325:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=NA C2=0.133
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(19.4=73.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]