BtaINT0007688 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N0P1]
Coordinates
chr18:64607953-64612110:+
Coord C1 exon
chr18:64607953-64608076
Coord A exon
chr18:64608077-64612008
Coord C2 exon
chr18:64612009-64612110
Length
3932 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
TGTCTTCCTTTTTTCTCCATGCC
3' ss Score
3.26
Exon sequences
Seq C1 exon
TCTGTGACCTTCGATGATGTGGCTGTGACCTTCACCCAGGAGGAGTGGGGGCATCTGGACCCGGCCCAGAGGACCCTGTACCAGGAGGTGATGCTGGAGAACTGCGGCCTCCTGGTGTCTCTGG
Seq A exon
GTAAGGCTCCTGCTCTGCTGTGCGGGCCCCGACCACCCCGTGCATCCCGGACCCTGGCTCCATCTTGGCTTCTCAGGAAGGGCTCAGGAGTCCTCCCTCCCCCCTGCTTTCTCACAGTTTCACTCATGCTTGAGAGTCACCTCCTCTTGCCTGCTGTCTCTGTGTCTCTTTGAATAAAGTTCCCCTTTGGCTCTTAGAAAGTGGTGGAAGAAATGAATGTTCTGCAGAACCCAAAGGCAGCATTTCCAGTCGGGCCACATGGGACTGGAATAGGAGAACCAGGATTCTACCCTGGCTTCTGGGGCTTCCGTCCTGGCTTCTTTCTCTGGCTTTGCTCACGTCCCTGTCTTTTCAGAATGGCTTTTGCACCCCAGCAAGTTTGACAGGAGTGACCACCCCAATCCCTGCTCTCCAAGGCTCCAGATGCCTTGTTTCTACTTCTTCGTATGTTTATATTGTTGCTCTTTCTCTGCTGCAGGGCTCTGGGTGGGGGTGGGGGTGTCCGTGAGGAGGAAGTGACCACCTGAACCTCTCAGCCCAGGGCCCGGCACAGACCGGCCTCTGTCTGAGTTCCTGTTTCACATTCCAGAGAGGGAGCGGACCGAATGAGACCGGTTCCCAGGCGTCCCCTATACCCGAGTGCACAGGATGTGGGTGACAAGCTGTTCTCCAGGAAGAGGGTGAGGCAGCCGGGGCCCCAGGAGGCCTTTGCCTTCAGTGCCAGCAGGTCCTGTCTAGCCGCAGGGTCTCAGTCAGGGGGCTTCTCTGTCCTCCTGCGCCTTCACGGGTGTCTCATGTTCGCTCAGTCTCGGCAGGGATCATCTGCTGGTCCGAGAAGGAGAAGCTGGGAGAGGAGTGCGTCTCAGCATGTGGCGGTTTTGTGCCCAGGAGACATCGGGCAGCGTCTGCTGCATCTGCCCGTCACATGTGGGAGTGAGTGGTCCCGGGGTCTGGTGATGAGTCCAGAGATGCCCCTCAGCACCAGAGGGTGGACACGACAGCCCTGCTCAGCTGAGGATGACCCAGTCCGCATGGGCCAGAGAGCCACAGTAGAGAGACAGCAGCTCAGGGACGGTCCTCTCAGGCTGCTCAGTTTGAGGGAAGGGAGGGCTGTAAACCCAGGGCTTCGGTGAGACAGGCGTGTTCTTAGAGACCTGGGATTGTGTTCTATGTCAGTGAGAGGAGGTTGAACAAAATCAGGAAAAGCTTGACATATTTAGATAATTTACAACAGAATTAAACAAATAGAAATGCCCACCATCGAGCCCCGATGCCTCCGCCCGCCTCCCCTGGCTCTCCCCACGCTCACTGACGGGTCGCACTGGTGCCTTGCCGTTCTGTGCGTACCTGACGTACTTGACGTGCTCGCCTCCGGCCTCTGAGGTGCTGTCCTGTTTTCCTGGTGGGTGTTCTTGGGCATTTTGGCTTTTCACGTGGCCACCTCTTCTCTGCACATGGCCACCTCGCTTCCTCACCAACTGTTTCCTGACCACAAACTCTCTTAGCGCCCCTCCTCATCACACTAGCTCTCCCCTGTCACCTGATTTACATCCTCTAAGCCAGCGGTTCTCATTCCCCAGGGACACTTGGCCCCGTCTGGAGACATAGGTTGTCACCACTGGGATGGAGTTGCTACAGGCACTTACTGAGTGAAGACCCGGAGCGCCTCCACACATCCTTACACTGTGCAGGAGAGACACATTCTCTCCCCTTCTCCTCAGCAAAGAACTTTCTGGATCTGAATGTCAGTTGTCCAGAGGCTGAGAAGCCCCATTTCTGAAGGCTCACGGACACTTCATCAGGGGCACTGGGAACGACCCTGAGGAAGGCCTTCGTTTACTCTTTTTCGTGCCTCCTGACTTCTTTAGGGAAAATGTGGTTCAGTACTTAACCCTTCTTCCCCCCAACTGTTGCTAATTTCCTCTCTTCAACAGGGGGCCATCCCTGAGCCTTGGTGCAGGCTTGCTGGCCCTTAACTCTCACTGTTCAGTCCCTTGGCTGCATTTTCAGGTTGACTTATCGACTTGTCAGCCTCTGGGTTTCTGTTTCCCACTCACCATTGCTGTACAGGAATCCCTTTTTGAAGGGATGTGAGAAACAGAAAAAGCGTCACTTGTAGCACTGGCGTTACTGTGACTACGAGTCAGAGCTCACCCAGGTCGCTGACTGACCGCACGGCAGGCCCGATGCGGGCACTGCTCTGCTCCTCCCGTGTGACCCTCGGGCTCGCCTGGCCCTCAGGACAGTCAGGGGAACTCGGCTTCCGTGGCGAGCCTCGTACAGTGGAACCTTAACAGTAAGGAACATACACCTTCACTTCATGAAGCTGTCCTCTGTGGGGTTCCTTTGAAGTAAAAATCCTTTTTTTTAGTGAAATATTGATGGCAGTAGATGTGACCGTATCACTGTGCAGGAGTCTCAGTTTTATTATTTTCTCACAGTTCATGAAATACTGAAGTCTGCTGAGTCTGCCCCTCCCCAGCCCTGCTCCCAGTAGTTGCATTTCGGTGCTCACATCCCTCCCTCACAGCTGCCCCGCACTTGGTCTCAGGATGCTGGCCCCACTCAGGGGTGTCTGCTGTTTCCTCCTCATTGTGGTGTTGGGGAGGCCAGGGTCAGAGCCAGACTCTGGTGTTTAGTCCCTGCTTTGCACCTTAAAAACTGTGTGGTCCTGGGCAGTTACAGACTGCGTCTGGGCCTCGGGGTGCGTCTGGGCCTCGGGGTGCTCCTTGGTAAACCGGAGTAAGGTGGAGTTTACTTCCCGGGGCTGCAACAGGGCTAAGTGGGTAACTTTCTGGAAAGGGTCAGAACAGTGCCTGGAGTGACCAGGTTTTGTGCAGGGTAGCATTGCGAGCCTCACCACCATCGCTCCTGTCTTTACTCATCAGGATTTTCATCATCTAGACCTGCACTCGGCACCTCTGGGAGCAGGCTTGTGTAGCTTTGTGGTGGAACAGCACACAGAGCCGAGACGGTTAGATCTGGGCTCCGTGTTGGCCCAGCCGTTCACCAGTTGTGGGCTCTTTGGCACATCACATTATCTGCCTGATTGTTGCTTTCTGTATGGTTTTTATCTATAAAATGGTGCTACTCACAGACTCCGAAAACAAACTTATGGTTACGAAAGAGCAAAGCAGGTGTGGTGAGGGGTAAATTAAGAGTTTGGGATCAACAGATACACACCTCTATATATAATAATAGATAAACAACAAGGTTCTAATACAGCACAGGGACTATATTCAGTATCTTATAATAACCTATAACGGAAAAGAATCTGAAAAGCAGTGTGGGTATTTGTGTATGTGAATCACTTTTCCTGTACACCCGATACAAACATGACATTGTAAATGAACTTTAACTTTAAAAAAAATGGTGGTCCAGTGGTTGAGTCTCTGCCCTCCTGATTCAGAGGGTGATGGTGTGATGCTTGGTCACTGAACTAGGATCCTGCATGGCTAAAAAAGAAAAGTGCTGATCGTAGTATGTACTTGCTGAGAATGCTGTGAGGAAACCCTGGGGTAGACTCACCTGTGGTCTGTAGAAAGAACAGTACAAAACTTTGCTTGTGTTCTAAAAACGGAACTTAGCAACGGAGACACGTAACCTTGTTTTGAACGAAAAGAATCAATATTTCAAATATGTCAGTTGTTTAAATGACATCATAAATCTATTTCAATTTTGAAGTAGTGTGGTGCATTTCAGTTGCTTGAACACAGTCCTTTGACCATGTTAACTGTATATTAGCTTTTGATTTAGTGTTAGGAATAAAGCTCCATGGCAGTGTGGCGTGTCTTTGGTTTTTGGGTCGCAGTTCCGCATTTTGTGTGCATGGGAGCAGCTTCATTCTGAGGTCTGCATCCTGAAGTCTCACACGAGACTGAGAGGTCTTCCCAGTTTTCACAGAAGCCCCCATGTCTTCCTTTTTTCTCCAT
Seq C2 exon
GCCCAGGGTGTCCTGTCCCCAGACCTGAGCTGATCTACCGGCTGGAGCACGGGCAGGAGCTGTGGACGGTGAAGAGAGACCTCTCCCGAAGCACCTGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038926:ENSBTAT00000004511:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=NA C2=0.200
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=97.6)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development