BtaINT0007909 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BCJ7]
Coordinates
chr7:8396460-8397532:-
Coord C1 exon
chr7:8397411-8397532
Coord A exon
chr7:8396731-8397410
Coord C2 exon
chr7:8396460-8396730
Length
680 bp
Sequences
Splice sites
5' ss Seq
GGAGTGAGT
5' ss Score
6.05
3' ss Seq
TTCATGCTCTCATCCTGTAGGAA
3' ss Score
10.55
Exon sequences
Seq C1 exon
ACCAATTGGGAGTGCCTGGTCACCCAAGGCCACACCCGTCTGGACATGTTTGAACATGTCAGCCTCCTGACCCTGGACAGTCTGCAGAAATGTGTCTTCAGTTTTGACAGCAATTGCCAGGA
Seq A exon
GTGAGTCTTGGCCAAGAGCCTGGGAATATGAGTCATAGACCCAGGGTAGTAGACGGAGGAGGGAGGACTGGCCAGAGCAATCAGGAGGGCCTTCCTGAAGGAGGTGGCCCAGGGCAGGACAACCCGGGACAGGAACAGGGAAAGAGAAGGAGCTATCCTTTCAGGTAGGTAGACCTGTTTGATAAAGAACAGAAGGCTAGAATGAGAAAAGTATGTGCAATAGTGAGGAGAGACATTGGAAATAAGGTTGAAGGAGTGGGCAGATAATACCTTAAGGACATTCTGAAGCCAGGCAAAGCGAATCTGACTAAAAGAATCCAACTGTCATATAGACATTGGATGTAAAAAGACTAGAGAAGGGACTGGGCCACTGACCAGCTGGGAGAGGATAAGGTATGAACTGGGTGGACGGTTCTGGAAAGGAGACGGGGGTGGTGAGAGAGACAGGAGAGAAACATGATATCTAAGCTGTGCTCCAGGTGCCTGGGGCATGGAGTCAGCTTATGGAGATGGGATGTGGGTTGAGAAGAGTCTGAAGAGTCACATCTTCTGGCTCATCCCCACGCTGTATCTGTGAACCATTTGTTCTTGGAGCCTCAATTCCTGAAGGGAGGTAGCCGCTGGCTTCTGGGCTTCAGGTGTTTTAAGTTGTTGCCTCCCTTCATGCTCTCATCCTGTAG
Seq C2 exon
GAAGCCCAGTGAATATATCACCACCATCTTTGAGCTCTGTGAGCTTGCGGCAAAGCGGAACAAGCAGATCTGCCTGCACACCGACTTCCTGTACTTCCTCACCCTGGATGGGTGGCACTTCCGCAGGGCCTGCCGCCTGGTGCACAACTTTACAGATTCCATCATCCAGGAGCAGCGCTGCACTCTCCCCAGTGAGAATATTGATGACTTCTTTAAGGCCAAGGTGAAGACCAAGACTTTGGACTTCATTGATGTGCTTCTGCTGAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039337:ENSBTAT00000040185:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.0=100)
A:
NA
C2:
PF0006717=p450=FE(22.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAATTGGGAGTGCCTGGTCAC
R:
GTCTTGGTCTTCACCTTGGCC
Band lengths:
357-1037
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]