BtaINT0008074 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N2X6]
Coordinates
chr26:42968350-42974181:+
Coord C1 exon
chr26:42968350-42968664
Coord A exon
chr26:42968665-42974117
Coord C2 exon
chr26:42974118-42974181
Length
5453 bp
Sequences
Splice sites
5' ss Seq
CAGCTACCT
5' ss Score
-0.11
3' ss Seq
GAGCTCAACTTCCCGTGCAGTTG
3' ss Score
4.61
Exon sequences
Seq C1 exon
ATGAGCCAGAGCTGCAGATGGTGGGCAGTTCTGAACAGTGCTCGGGACGTGTGGAAATCCTGCACCAGGGAGCCTGGGGCACTGTGTGTGACGACCTGTGGGACCTGAACAAAGCCGGGGTCATGTGCTGGCAACTGGGGTGTGGTCGGGCCATCACTGCTCCGGGAAAGACCCACTTCAGCCCGGGCTCTGGAGACATCCTCCTGGACAACCTGCAGAGTTTGGGGATCGAGAGCCACCTTGGCCAGTGTCCCAGTTCTGGCTGGTCAGACCCCAACTGCGGTCACCATGAGGATGCTGGCGTCATCTACTCAG
Seq A exon
CTACCTGTCTCTCTCTTCCAGGGGCAGGTTTTTTCTGATCTTTCAGCAGCTCAGATAGAGGAAGGTGTGCACAGAGCAGGGCTGGTGACCTGGCAGAAGGTGTCAGGGAATGCCGAGAACTAGGTTCTCCTGGGAACACACACTCCAGGGCCACATATTTGTCAGGGGGTGTTTTCTGCAGCTCCTCTCAGGTCTGGAGCTGTTTACCAAACATGCCCTTTCTTGCTTGTGTAACAGGAAACCTGCCTGCTTGGGACCTGCCCACACTGGAAAACCAGCACTTGTCCTGATATAATTTAACTCAGATGTCCTAAATCTATCTTTTTTTAATGCATGCAGATGCAGGGGACTGGGCTCCAGACGTGACTCCTGCACCCCCAGGTAGGTCTAACCCTGCATTTCCAATATCTCTGCAAAGTAAATAAGAAATCTAACCTCTTTCAGAGATCTAGGTTCAATCCCTGGATCTGGAAGATCCCCTGGAGAAAGGAATGGCAGCCCACTCCAGTATTCTTGCCTGGAGAATTCTATGGAGAGAGGAGTCGGGGGGAGGGGAGGCTACAGTCCTTGAGGTTGCAAAGAATCAGACATAACTGAGCAACTAACATGCACAACCTCTTTCAGCATCCAGACACAGGTGGACAGTGACCTAGACACTGGAATCACCCAGGGAGCTTTAAAATTTTATGATACTCAAGCTGCACCCCAGACCAGTCACATCAGAACCTCTGGGTCTCACCCAGTCATTGGTGATATTTAAAACTTCCTGTGAAATTCCAGTGTGTGGCCAAGGCTGAGAGCCAGCGGCTTGTATGATAAGCTGAGAGTCACATTGCCCAAATGAAATAGCATCCGACACTCTCCTCTCTGGACGGCAGATCAGGGAGGGGCAGGAGGGACTGAAAGAGGATGTTCCATCACAGTGGCGGAGCAGAGGGCTGATCTGGAGTAGAGGAGGTGGGAAGGTCTACCTCTCAAGAACACGAGTTAGAGAATGAAAGTGTGCAGGTAAACAAAGATGCACCGAATGTCGAACTCTCCCAGTGGGTCAAAAGCAGATTGGGCGTGAGAAGCATAAACAATTAGGGCTCCTCTGTGGGCCTCCTGGCTTAGCCAACACAGCAGGGATAGAGGAAGGTACACCTTCTTCAGGTAGACTACTCAAAACCCGTGTGATCCGCACCCCCCCACACGGGAGACTCCAGCTGAATCAGAGCCTCCGGCACTCGCCTGCCTCTGCAGAACAAGTTCTTAGCTGCCATCTTCCCTGATCACTGGCACCCTGGGCCCCAGCCAGCCTCCTCCCAGCCTTACCCAGTGACTGCTGCCACCCTCAGCCCTCCGTGGGAGCCTGGGTTGGGGAAGGTCAGGGGCGCACCTCACAGTGTTTGGGGGCCAGGCAAGGTGACTGGCAGCTGCCCCAATCCTGGGCTGGTGCCACTATGGCACATGTGGAAGGACACTTGGTGGGGGCCTCTTTTCCTCCAGTCCAGGTCCCGCGGGCATCCCAGGTGGAAGACACCATCCCTTGGAGGCTGCCCTTCTGGGGTGGGTTGCAGAGGTGGGCCCGTGGGAAGGGGCCTGTCTTACTTCCTTGGACTCTGTCCAACCTGCCTTTCCCCACCACGGCTCTCAGCTTCCCAGGTTTTGTCCCTTGGCATTTTGGCACCTGATAAATGTCTGCAGGGACAGTGGCATGTTCACGAGCCCAGTGCTGTGACTGTGGGTGATGCCTCATGACTGGTCACTCTAAGGACAGCCCTTAGGTTGGTGGACCCAGCACAGAAGAGAAAACAAATCACATGACTGCGTTGTCTGTGATTTTGTGGTGAATCACTGAAAGAAGGGGAGAAGCTACATCTCAGTCGGGGAGCAAAGAGAAATGAGTGTGTCCACACCATGTATTGAGACTCAAGACTAGTAGCAGCTTCATTCATTTGCACTTAAGTAGAAGGTCATGTCATTGGGTGAAGCTCTTTCCTGATTTTCTTTGGTTTTGATTTTTGCAGCTGCTGTTCCCCAGGTGTCTGTCCTACCAGGTAACTCTCTTGCATTGGAAGTATAACCCCTATAAGGATAGAATGATGATTGTTGTTCAGTCACTAAGTCATGTCCAACTCTTCGATCCAATGGACTGCAGCATGCCAGGCTTCCCTGTCCTTCGCTGTCTCCCGGAGTTTACTCAAACTCATGTCCATTGAGTCAGTGATGCCATACAACCATTTCTTTGCATGTTGATGTATGGCAAAACCAATACAATATTGTATAGTAAAAAATAAAATAAAATATAAAAAAACAACAATTTCTTCTACTTTTATGAATTAGAATTGTGGTGATAATTCATAAAAGTAGAATAGACATCCACTGTCCTGGTTGCATGAGGGAGAGGAAGTGGGGGATGGAGCCCTCCCAAATGGGTGGATTGTCTGCATCTCAGCTGAGCTGATTTGCATGACAGGAAGCTAGGACAGGATTAATGAAGTGTTTGACACCCCACAGCTGCCATGTATGTATCCAATCCATTTCCAGCCTCACCTACAATCTTAGGGTCCTGCCTACCCATCACACATCTTTCCTCCACCCTCACCCCCACCCCTTGGGGGTACAACCACACTCCAGCCAAGCCACGGCTATGTCTACACCAGCATGATCCCTTCCCATTTTGTGATTCACTCTTAAGCTTGGTGGGATTCTGGATTCTATACCTGGGAAAAGATAAGGTACCTGTCTGAAGACTCCAGTCATGGGTCTCTTCATCCCGTTTTCACAGGAGGAAGTAGCTCCTGTGGGGGTGTCATTTCAAGTCTGTCAGGATCCTTCTCCAGTCCCCGGTACCCAACCAATTACCCCACTGACGTGGAGTGTGTCTGGGTGATCCACCTGGCCGAGAAGTTCCGAGTAGACCTGACGATCCCCAGCCTGAAGTAAGAGTTGTGTCTTTCTCTGCTTCAAGAGCCGGTTTGGATTTGAATCTGTGCTTTCCCCAAGAGGTTGCCTTTCCAAGTGCCTGAGTCATTAGCTGCTATAACAAAAATTTAATAGACTGGGTGTCTTAATAAACAAAAGAAGTTTATTTTCTGTAGTGGCCCCATTGTGTAATGGTTAGCACTCTGGACTTTGAATCCAGTGATCAGAGTTCAAATCTCTGTGGGACATAACTATCTTTTGGGCTTCCCTGGTGGCTCAGATGGTAAAGAATCTGCCTGCAGTGTGGGAGACCTGGCCTCGATTGGGTCAGGAAGATCCCCTGGAGAAGAGACTGGCAACCCACTCCAGTATTCTTGCCTGGAGAATTCCAGGGACAGAGGAGCCTGGAGGACCGTGAAGTTGCATAAGTTGGACACCATTGAGTAACTAGATGACGTGACATGACGAACAAAAATATAATAGATTGGGTGTCTTAATAAACGACAGAAGTTTGTTTCTCACAGTTGTGCAGGCTGGCAAGTCCTAGATAAGTATTCCAGCAGGTTCAGTGTCTCGTGAGGACCTGTTCCCAGGCTCATAGATGGCTGTCTTTCACTGCGACTTCAGGTGAGAGAGGGGACCTGGAGCTTTCTCAGCCTCTTTATAAGGGCACTAATCCCATCATGAGGGCTCTGCCCTAACAACCTAGTAACTGCCCAAAGTCCCCACCTCCTAAGACTATTACTATTGAGGGTTAAGTTTCAAAAAATGAATTTTGAGGGGACACAAACCTTCTGCCTACAGCACCATCTGACAAATCCTTTCACATGTTAGGTGAAAACTGGTCTGGTCATCTGAGCTTAAGGAGTTTTTTTAAAATTCTTTTTTCATATTGTATTTTTTTATTAATTTATTTATTTTAATTGGAGGCTAATTACTTTACAATATTGTGGAGGTTTTTGCTTTACATTGACATGAATCAGCCATGGGTGTACATGTGTCCCCCATCCCAATCCCCCTCCCACCTCCCTCCACATCCCATCCCTCTGGATCATCCCAGTGCACCGGCTTTGAGTGCCCTGTTTCATGCATCAAACTTGGACTGGTGATCTATTTCACGTATAATAATATACATGTTTCAATGATATTCTCTCAAATCACCCTAACCTCACCTTCTCCCACAGTGTCCAAAAGTCTGTTCTTTATATCTGTGTCTCTTTTGCTGTCTCGCATATAGTGTCATTGTTCAGTTCAATTTAGTTCAGTCGCTCAGTCGTGTCTGACTCTTTGCAACCCCATGGACTGCTTCACGCCAGGCTTCCCTGTCCATCACCAACTCCCAGAGTTTACACAAACTCATGTCCATTGAGTCGGTGATGCCATCCAACCATCTCATCCTCTGTCATCCCCTTCTCCTCCTGCCTTCCATCTTTCCCAACAGCCTTGAGTAGTGTCAATAGAAAACAGCCTACAAAATTTTAAAAATTTATTCAGTTTGGTTCAGTTCAGTCGCTCAGTCATGTCCCCACAGACTTTTCAACCCCATGGACTGCAACATGCCAGGCCTCCCTGTCCATCACCAACTCCTGAAGTTTACTCAAGCTCATGTCCATTGAGTCAGTGATGCCATCCAACCATCTCATCCTCTGTCGGCCCCTTCTCCTCCTGCCTTCAATCTTTCCGAGCATCAGTGTCTTTTCAAAATGAGTCAGTTATTCACATCAGGTGGCCAAAGTATTCGAATTTCAGCTTCAGCATCAGTCCCTCCAATGAACATTCAGGACTGATTTCCTTTAGGATGGACTGGTTGGATCTCCTTGCTGTCCAAGGGACTCTCAAGAGTCTTCTCCAACACCACAGTTCAAAAGCATCAATTCTTCGGCACTCAGCTTTCTTTATAGTCCAGCTGTTGTTACCATATTTCTAAATTCCATCAGATCAGATCAGATCAGTCGCTCAGTCGTGTCTGACTCTTTGTGACCCCATGAATCGCAGCACGCCAGGCCTCCCTGTCCAACACCAACTCCCGGAGTTCACTGACACTCATGTCCATCGAGTCAGTGATGCCATCCAGCCATCTCATCCTCTGTCTTCCCCTTCTCCTCCTGCCCCCAATCCCTCCCAGTATCAGAGTCTTTTCCAATGAGTCAACTCTTGGCATGAGGTGGCCAAAGTACTAGAGTTTCAGCTTTAGCATCATTCCTTCCAAAGAAATCCCAGGGCTGATCTCCTTCAGAATGGACTGGTTGGATCTCCTTGCAGTCCAAGGGACTCTCAAGAGTCTTCTCAAACACCACAGTTCAAAAGCATCAATTCTTCGGTGCTCAGCCTTCTTCACAATCCAACTCTCACATCCATACATGACCACAGGAAAAACCATAGCCTTGACTAGATGGACCTTTGTTAGCAAAGTAATGTCTCTGCTTTTGAATATGCTATCTAGGTTGGTCATAAGGGTGTTTTTCTTTCTGACTTACTTCACTCTGTATAATAGGTTCCAATATCACTTAAGGAGTTTTAATCACTGAGCTCAACTTCCCGTGCAG
Seq C2 exon
TTGGAGAAGACCCCATGAGCATCCCTGAGGCCATCATGGAGGGAACCCCAGCTGGGGTGACCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039755:ENSBTAT00000066099:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.009 A=NA C2=0.591
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=90.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]