BtaINT0008220 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N4G1]
Coordinates
chr8:8625660-8627872:+
Coord C1 exon
chr8:8625660-8625852
Coord A exon
chr8:8625853-8627624
Coord C2 exon
chr8:8627625-8627872
Length
1772 bp
Sequences
Splice sites
5' ss Seq
TGCGTAAGT
5' ss Score
9.73
3' ss Seq
TCCTCTTTCTTTTATTTTGGAAT
3' ss Score
3.79
Exon sequences
Seq C1 exon
TGCAATGTGGCCAAAAAATGAACACTTCTGAGAAGTCTGAAGTTTTGGAAATCATAGGTGGGGTGCCTGCAAACATCAGAGATTTCCCCTGGCAGATACGTATCCTTGAAAACGGGAGTCATCTCTGTGGAGGATCGATCCTCAGTGAGTGGTGGATTCTGACCGCAGCCCATTGCTTCAAAAGCAAAAATGC
Seq A exon
GTAAGTGTTGCAGATAGAATTTTTTTTTAAGCAATGTAGTAGAATATTTGCCCTGTGCTGTTGTTTAGTCTCTCGGTTGTGTCTGACTCTTTGTGTGTCTACCCCATGGACTGTAGCCCGCCAGGCTCCTCTGTCCTTGGGATTTCCCAGGCAAGAATACTAGAATGGGTTTCCACTTTCTTCTCCAGGGGATCTTCCTCACCCATGGATCAAACCCGAATCTCCTGCATTGGCAGGTGGATTCTTTACCACTGGGCCACCAGAGAAACCCATATTTGCCTCTGTGCTGTGTGCTGTGCTTAGTCTCTCAGTCATGTCCAACTCTTTGCGACTCCATGGACTGTAGCCCACCAGGCTCCTCTGTCCATGGGATTCTCCAGGCAGGAATACTGGAGTGGGTTGCCATGCCCTCCTCCAGGGTATCATCCCAACCCAGTGATCGAACCCAGGTCTCCGGCATTGCAGGCAGATTCTTTACCGTCTGAGGAAGGGAAGCCCAAGAATACTGGAGTGGGTAGCCTATCCCTTCTCTATGGGGAATCTTCCCAACCAAGGAATCAAACCAGGGTCTCCTGCATTGCAGGATTCTTTACCATATGAGCTACCGGGGAAGCCTTTTGACCCTACATGCCTATTATCTTTTTGTATTATTTATATATTTTACATTATTTAACTTTAAATTTTAAATTACATTAATTATATTTTATTTGTATATCTACATATTTAATCATTTTATTTTTATAATTATAATTTATTTTAATTATATTAAAATTTAATTTATATTTAATTTATTTTAGTATTTATATTATTTTATACTTTATATTATTTATATTTTTAACATTATTTTGCCCCTACGTGCCTATTATTCATTCATCAGGCATAAAATAAAATACAAGGAGGTAGATACTTGTGTGGTTAAATATGATGCTTTGCAGGTAGAAGGAAGCTGTTCTCCTAGGACGCTGCACAGCTTGTTGTGTGGGTTCTACACTGCGGAGCAAATGTTCCTTTGCTAAGGAAAGGAACAGCAGTTTGCTAAGTGCATGTAGTCCTGTGGAGGGTCCTTTCCTAAGGATTGGGCTGACCGTGACAGTGACCATGGAACTGGGGAATCCTAGAAGCAGTAGGCCCCGAGGGTAGGACACAGGCCTGGCTGCATGGCAGAAGGCATTGTCTGAGCGCCAGTCCACAAAATAGTATTTTTGCAAAACTTCTCATTTGTCTGTAATACAGCCAGTCCAGCTTTTCTTGCAAGTCAAGGTCAAGCCCCTCAATCACTTATGCCAGCAGTCTCCAACTTTTTGGCACCAGGGACGAAGTTTCATAAAAGACAATTTTTCCATGGACGGGGAGAGGGGATGGTTTGGGGATGATTCAAGTGCATCACATTTATTGTGCACTTTATTTCTATTATTATTACATCAGCTCCATCTCAGATCATCAGGCATTAGATTCCAGAGGTTGGAAACCCCTGACTTATGCATAGTATGGCTTCCTAGACATTTGTTGATGAAATCTACAGGTGAATTTTGCCCAAGTCTTGCCATTAGGTCAAGAGCTGGTTGGCTAGAAAGCAGGGCAGAGGAGTCAGGTCTGGCTCCTCCTCCTTGGCTATGAGCCAAGTGCAGAGCCCTAGCTGCCCGACCCCTCCTCCCCCCACCTCCATCCCCAGGATCACAGTCTCAGATAGGGGAGGTGGGGCAGTTATTTTCTCCTACGGTTCAGTTTTCATCTTCCCACCACTTACCTTTCTCCTCTTTCTTTTATTTTGG
Seq C2 exon
AATAAGATCTACCTTGGAGGTCACACATGGTGAAGAAAATCTTGACACCCAGAACTTGACGAAGATAAAAGTGGACAAGCTAATTATTCACAATTATTTTGACAGTTGGTTCTACCTTAATGACATCGCTTTGCTGTTGCTCAAATCCCCTCTGAGCTTGGGTGTCAGGAAGGTACCCATTTGCCTTTCAGAGGTCACTGCCATAGAGAGATGGAGGAACTGCTGGGTGAGCGGGTGGGGCACTACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040038:ENSBTAT00000055920:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(20.5=72.3)
A:
NA
C2:
PF0008921=Trypsin=FE(36.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGAGATTTCCCCTGGCAGA
R:
CCCAGCAGTTCCTCCATCTCT
Band lengths:
345-2117
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]