BtaINT0009136 @ bosTau6
Intron Retention
Description
NA
Coordinates
chr18:47862388-47868281:+
Coord C1 exon
chr18:47862388-47862549
Coord A exon
chr18:47862550-47868198
Coord C2 exon
chr18:47868199-47868281
Length
5649 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
3' ss Seq
AAGTCTTTCTCTTCTCCCAGGTC
3' ss Score
9.07
Exon sequences
Seq C1 exon
TGGAGCCTTACGTCCCACAGACTACCCGGTGACTTTGGCTTCTGGTTCTTTTTCCGTATCTCTTGTTGCAGACTGCGCGTGAGTGGCACCGTCTGAGGAGGAATCCAGCGTGGGTCGCCGCGGAGGCGACTATGCAGACTTAGCCAGAGCCCGCGAGGGACG
Seq A exon
GTGAGTGGCGGTGGGAGTGGGGTTGCGAAAGGCGCTGAAAGCGTGGACCGCCCGAGCGCCGCCGCGCGAGTCCGCGCGTCCCCTCGAGGCTGTGGACGCTTGAACAGCGGGGTTGGGGGGGCGCTGGTTTTATCCCTCTTTTAGAGTGAGTGCGATTGTGAGACTGAGAGAGGTGTGCGTTCGTTTTGTGTGACGGAGACACCGAGTGAGTGTCCTTTCTGTGAACGTGGATTACACAGAGCTCTTTGTCCCCGCCGCTGCTTCCAGGCTTCTCTCAAACATGTATGTCTCCCAAAGAATGTGAACGCTGTTGGGAAATCTGTTTTTGAGTCCTGCAAGACACCTTCCAGCAAGAAAGTACCTACCGGCTGCTGAAATCGGAATTTTAAAATCAAGAATTGTCCCTGAGGCCAGGGTTCTGAGAGAGGCCACTTTGTAGCAAGGGGCTTGAGAGTCTGTCCTGGTCGCTGCCCACCCTAAATTATAAATTCCCCCATTTCTCCTCCTGCCGTCCAGAACTTTAAATAGCCTCCAGCACACTGTGGCTGCCAAAAGTTGTATTAATAATTAAATAATGTCCAGCTGTTAAAAGGCTGTTATTGGGGGAAAAAAAAGAATTGCTCCTGAGACAGGTTCCTACCCCGATCCTTCCTCGGATTACCCTTCCTGGAAGTTCTCTGGGGCTCATTTATACATTTGAGTATGAAAGCATTTCTTGAGCTCCGATGGCAGAAACCTGCTGTGAGCCTTGATACAGATTCCACAGTCCCACTTAATTCTGGTTTTATGTATGAGATCACGGCGGATTTAGTAGCTTTGAAGGATGGAACACAATAAATGCTCAACATTGGCTTTATTGTGGTGTCATTCACCCTTCAGATTTCTATAAATCAATGACGAAAATATAAAGTTAATGTGATGAGTGCTTCTGTTATCAAAGGGCTGCTGCTGCTAAGTCGCTTCCGTCGTGTCCGACTCTGTGCGACCCCATAGACGGCAGCCCACCAGGCTCCCCCGTCCCTGGGATTCTCCAGACAAGAACACTGGAGTGGGTTTCCATTTCCTTCTCCAATGCATGAAAGTTAAAAGTGAAAGTGAAGTCGCTCAGTCGTGTCCGACTCTTCGCGACCCCATGGAGTGCAGCCTACCAGGCGCCTCCGTCCATGGGATTTTCCAGGCAAGATTACTGGAGTGGGGTGCCATTGCCTTCTCCGATCAAAGGGCTAGCTATGCTATGCTATGCTAAGTCACTTCAGTCGTGTCCGACTCTGTGCGACCCCATAGACGGTAGCCTACCAGGCTCCCCCGTCCCTAGGATTCTCCAGGCAAGAACACTGGAGTGGGTTGCCATTTTCTTCTCCAATGCATGAAAGTGAAAAGTGAAAGTGAAGTCGCTCAGTCATGTCCGACTCTTCGCGACCCCATGGACTGCAGCTCACCAGGCTCCTCCATCCATGGGATTTTCCAGGCAAGAGTACTGGAGTGGGGTGCCATTGCCTTCTCCGATCAAAGGGCTAGATGGAGCTAATTTTCCAGAGTGTTCTGATCCAGGGGTCCTTTGTGTTTGGGGGCTTACAAGGGACCACAAAGTCTTTGTAATTGTCTAGAATTACTGCATATATTTGTAAAAATGCATTTTTCAAAGGTGTGCATAACCTTAAAAGATTAGACATGGGTAACTCATCTGCAATGAAAGATTTTTATACTTTTAGATGATTTTTCACAAAATTAATGATTATACAAATGGAATGGTTAAGAAAATCACAGGACATCCATGAGTTAAAATATTACATAGATAATAAAATTCCTGTTCATAAGAATTAGTCATTACAAGAAAAAAAAATGGCTATTATCCAATGTTGAGCAATCTTAATATACTGTAGTTATAAAACAGTAGTCAAGAAAATTTGAAAGCCTCAGCTCATTTTAAAAAGAGAATTTTGTAAAAACTTGCAAGGATTGTAGACAAAATGATAGTTTAATTGGTTTTTCAGAGAAGAATGAAAGTGTTCAGCTACATTTACTGAGCATTTTCTATGTACTAACTTTTCTATCTACTTGGTATACATGTTCACATTAATTTGTGAAGGCAGTTTCCCTTTCTGTTGATGTTAAAGTGTTTATGGTGAAATGTCTCTAATTATCATCAGTGCAATACAGCTAAAGGGTATTCAGGAAGTGAATATACCTAAGTGGTATTTTAATCATGTTGAGGTTTTCATCATAGATCTGATATTAACAAATCTTTTTAATAAGGAAAATATAGCCTCTTTCCAAAGTCATGTCTATAAATATTTTAATACTTTGAAATATCTTTATATTTTATTTATGATAATGGAATTAATACAGGTTTACTGCCAAAAAATAAGCCTGTGTTCATTTCCTTAAGGAATATATTGAGAAGAAAGCAAGGATAACCCATAATCTTCCTAGAGATAATCATTTTAACATTTTGATGTATATATATATATATTTTTTTTAATTCCATTTTTGTGTGGCTTTGTTTTGGCAGAATAAAATTGATCAAGGAGACAAAAGAGTCCAACTCATAGTTCAAAACAATCTAATCTAATCCAATAATGAACATTATACCCTGTATATGTAAGGAGAAGAGGGAAGGGCAGAGAATCTTGTGTGAAAAGCATTACAAACAGTTATGCCTTTTATTTATTACAAATGTTATTTGAAACAATTACCAGAGCACTGTATTACTAAGGGAGACATCTTTTCAGAGTTAATAACTTAGAAGTTTGAGCTTAATTTCTGAAAAAATAACACTAATCTCTAATTTCCAGGTGTCTTGCAAGTACAAGCAATTTTTACAAACATAGTTGTTATGCTAGAAAATAAAGATAATATTTATAAATATTTATGTAAATATGTGAAGAATAAAATTGATTCTCCAGTTGTATTCTCAATTTTATCATACTATTCTTTGAACTGGTTTATGATTCTGAAAAGTTTTTCTTACTCTCTATAGCTGCTGGGGACTGAGGAAGGGCATAGTTTCTCTTTTCTTGTCTAATAATCTCTCTTTTTAAAAATAATGATTTTATAAAGCAGAAACCTATTCTCTTGTCTAATAATCTCTCTTTTTTAAAATAATGATTTTATAAAGCAGAAATCTATTTTCTCATATGTAACTCCTAAAATTTTATTAAATATTAGAATTATAAGAAAGAGGAAACTCAAGAAGCACAAGTTTTAATAAAACCAGGAAGCATCAGAATTAACTTTTTATAATGAAAGATTAAGGAATATGGAATGATTTTCTTCTTCAGTAATGATAGAAATTTTACATTAGTCATCATGATGTACAGTTTAGTGTGTATATGGATTATTTTGCCTAGTCTTCAAAATAGTTTTATGTGATTTTTTTTATCCTTACTTTGCTGATGAGGAAATCGGCATTGAAATGTTTTTCTTAATTTCAGTGGGATGCCACCTCCTAAATTATGCTTGCTTTCTTCACTGAGCAATTCTTTTAATACTGTTTTCCATCAATTATGTGGTTTAATATCATCCTTATTAAGAATAGCATGGCATAAATGTCACAAAATAGCAGACTATAATATATTTAACCGGTTTGCTTGCAGTGAGATTTTCATGTTTTTAATTATGGACCATCAAAAATTATTCTCTGATGAACATCCTTGTGTATATACTTTGTAAATTTATATAGTTATTTCCTTAAAAATTTTTTGAAAAGTGGTATTTTGTAGTAAAAAAAAATCATACTTCTTTTAATTGTTTTAAATATGCCAGACCTGGAAAGTATAATATTTGAGGTAATGCAATTACTAAAAAGACATAATTACTTCCTTCAGAGTACTTATAATCTGTGAAGGAATTTAAAATCTGAATAGGAATAGGGCTTCCCTGGTGATTCAGTGGTTAAGAATCCACCTGGCAATGCAGGAGACATAGGTTCAATCCCTGGTGCAGGAAGATTCCCAACATGCCTCGGAGCAACTAAGCCCGTGTGCCACAGCTACTGAGCCTGTGCTCTAGGGCGTCTCAAGCCACAGCTTCTGAAGTCCATGCACCCTAGAGCCCATGCTCCACAACAAGAGAAGCCATTGCAATGAGAAGCCCGCACACCACAACTAGAGCGTAGCCCCTGCTTGCTGCAACTAGAGAAAAGCCAGTACCACAGCGAAGACTCAGCACAGCCAAAAACAAATAAATTAATTAATTAAAAAAAATTAAAACAATCTGAATAAATCTGAATAGGGATAATTATAAGGTAGTATGTGATAAAGGCCACTGGTGAGAGTTAAGTGACCTGCCTAAAGGAGACATCTGGGTGACTGTAGTGACAGTAAGAATATAAACAAGTAATACTGAGCACATGGGATCTGTATGGCAATATAAGTGGATATTTTTACTATGACCTTTATATCTTGTAGACTTCATTCTAGCATGAGATGTATAGCAAAATTATAGGTAAAATAATTCAGCAGCTGTCTGGAGGGTATCATGACAAAACTGACTGGTTCAGAAACAAAAATTCTTCTGTCAAAAAGATCTGAAATAAAGATGCATTGAGACTGTCATCAGTTTACAAAAGAGATTACTCAGGGACTGTTCCCAAGTTTTTTGTAGCCAAAATTCCAACATAACTGAGAAAAAAGTATGAAATGAGATACTAGGATCCAAAGGAAACAAAAGCCATTTAGTAAAATAATGTGAATTTAAAGAACAAAGAACTTTTGGGAAGTCTTCACCTTAAGTTAAAAAAATCCTTCAAATTCCTATGTCAGTTATTACAATGATTATGAAGTAACCTTTTTAAAAAAAACAAGATCTAAGCAAAAAGATAGGGATTGCTCATGTCAAATTCTGATCATGGCAAAGATATATTTTATGTCTTCAGTAGTCTTATTTGATTGTTTCATGTATGGACTAAAAACAATTGAATACACAGTGATTCATTTCTAAAGACATCCCCACAAAAACAAACGATGCAAAACAACCAAAAATATAAGAGCTCTTGGTATGTAGACATACAAATTTCTAGACATTTCTATCTTCTGTTTTATGATTATCTGTCATTCTTTTCTCTGTATTGATTAATATGCTGCTATATTTTATAAATAGAAATATATTAGTTGACTTTTCTATTGATGTAAATGAAACACTTTCCACTTCATTAAATATTCTTCTCAATTTAACATTTAATGACTACTTTGTATTCTAGTATATTGTTGGTCTGTCATATATTTAACTAATAAGCTTTGCTGGACTTAGAATGCTGAACATTTCTTGTCCATCTCTAATATTTTGATCAACTGCAACCACTTTCAAGGCCACAAAAAGAGGTTTTAATTTGGATTACATAGCCTCTTTTCTGTCTTGAAGTTCACAATGGAAAGAGGAAGATCTGTTTAGAGCAGGACACAGCTGCCCAATCTCAGGTTCATATCAATCTGATCACAATGGTACATTGGTCAGAACATTTCTAATGACTGCAGCTGAGGGCTCTGGGAAATGAGTGAGGAATGAATTTGTCCAGAATTCTTACTTACCCAAGTTGTGTGTAATGCAAAGTGATTAGGAATCTGGAATAGAAGAGCATAAATGGTGATATTAACTGATGCCCAGTGTGGAAACTCTAAAGCATATCTGAAAGTCTTTCTCTTCTCCCAG
Seq C2 exon
GTCTGGGTTTTCTGGACTCGGCTTTTCTGATAGAGAAGCCCAGAGGACTGATCAGCTCTTACAGGTCTAAAACCATGGCCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046367:ENSBTAT00000066337:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development