BtaINT0009426 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G3MZY0]
Coordinates
chr26:19220841-19222118:+
Coord C1 exon
chr26:19220841-19221019
Coord A exon
chr26:19221020-19221908
Coord C2 exon
chr26:19221909-19222118
Length
889 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
GGAGACTACACATCCCACAGGAC
3' ss Score
3.08
Exon sequences
Seq C1 exon
GACCCATCTGGCTGGACAATGTGCACTGTGTGGGCACCGAGAGCTCCCTGGACCAGTGTGGGTCTAACGGCTGGGGTGTCAGTGACTGCACTCACTCAGAGGACGTCGGGGTGGTATGCAATCCCCAGCGCCACCGTGGCTCCGTTTCTGAGAGGGTCTCCAATGCCCTCGGGCCCCAG
Seq A exon
GTGAGGAGGCTGTTCAGGCCCTTGCCTGAGCTGAGGGCGTGGTCAGGGAATGGAGGGCCTCCAGGTGATGAGCCAGGAGGAGGAGGGAGAGGAAAGGGAGCAGAGGGCAGGCTGGGAAGTGCCCCTGGGGCCCCGACACCTGCTTGTGGCTTGGAGCAGGTGCACAGACAGGGCCCCAGCCTGAGGCGGGAGGGCAGGGACTCGAGGCTGGGCCTGCCGGGAATCACTGAAGCTGCTCCCCATGAGAGGGTAGGGGGTTGCCTCACCCACAAGGCCCGGCCACAATTGCTGTGTCTTCCGGGCACAAACAAACCGGAGCTAAAAACAGCTCAAGCCAAACAACAGGGGCAGGCAGGGCAGGTCTCTGACTCTTACCCTCTGCTGCCGGGTAGACTCAGCTTGAGGACAGCTGGCCCAGGCCCACTGACTGGGGCGGCCATGACAGGCGGCTCTGCACTGGTCTAAGTCATTCAGGGCTAGGGTGGGAGGGCTCAAGGACCAAAGGATCCTGCTGTGGTCTCAAGCAGCCAGTCGGTGTCCATCCTCTGTCCTCCCCAGGGTGCTATGAAGAAGGTCCCCCTGTGCCCGATGGAAGCCTCCCAAACTCCAAAGGCTCCCATCCTGAGCCCAGGGAGGGTGTGGATCTGCTTGGTCCTCTCTGGGGTTCAGGAAAGGACCCTAAACAAACCGAGCTTCTGCCTCAAACCCACTGTGTGGCCCTCGGCCCCTGCCTCCCCATCTCTGAGCCTCCGTTTCCAGCCCGTCCAATGAGGGTGCTGGGTGGCATGATCTCTAAGTGCTCCGAGCCCCAGCTTTCCTATGTGAAGACCTGCAGCAGGCTCAGCAGGAGCAGGACTCCTGGGGCCCATGGAGACTACACATCCCACAG
Seq C2 exon
GACCGGCGGCTGGAGGAGGTGCGGCTCAAGCCCATCCTCGCCAGCGCCAAGCGGCAGAGCCCGGTGACCGAGGGAGCCGTGGAGGTGAAGTACGAGGGCCACTGGCGGCAGGTGTGTGACCAGGGCTGGACCAGGAACAACAGCAGGGTGGTGTGCGGCATGCTGGGCTTCCCCAGCGAGGCACCTGTCGACAGCCACCACTACAGGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046848:ENSBTAT00000065205:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.183 A=NA C2=0.145
Domain overlap (PFAM):
C1:
PF0053013=SRCR=PD(41.2=66.7)
A:
NA
C2:
PF0053013=SRCR=WD(100=74.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGCTCCCTGGACCAGTG
R:
TACCTGTAGTGGTGGCTGTCG
Band lengths:
350-1239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]