BtaINT0010994 @ bosTau6
Intron Retention
Gene
ENSBTAG00000047254 | ABCA2
Description
ATP-binding cassette, sub-family A (ABC1), member 2 [Source:HGNC Symbol;Acc:HGNC:32]
Coordinates
chr11:106214113-106214616:+
Coord C1 exon
chr11:106214113-106214209
Coord A exon
chr11:106214210-106214442
Coord C2 exon
chr11:106214443-106214616
Length
233 bp
Sequences
Splice sites
5' ss Seq
CTAGTGAGC
5' ss Score
3.75
3' ss Seq
CGCCCCTTCTCCTGTCCCAGGTG
3' ss Score
10.48
Exon sequences
Seq C1 exon
GTGAGCGTGGACATCTTCAAGGGTTTTCCAGATGAGGAGAGCATTGTCAACTACACCCTTAACCAGGCCTACCAGGATAATGTCACCGTGTTCGCTA
Seq A exon
GTGAGCCAGCCCCCTGGGCAGGTCCCCAGCCCGGGTCCCCCGCCTCTCCCCTGCCCGAGACCTTCCCATCCCGGTCCCCCTTTACGGTCAGTCACCCGCCCCGCCCCCACCCCCGGCCCCACCCCGCCCCCACCCCCGGCCCCACCCCGCCCCGCCCCACCCCTCGGCCCCGCCCCCACCCCTCGGCCCCGCCCATCTCCCCTCCCTCCGCCCCGCCCCTTCTCCTGTCCCAG
Seq C2 exon
GTGTGATCTTCCAGACCCGCAAGGACGGTTCCTTGCCGCCCCACGTGCACTACAAGATCCGCCAGAATTCAAGCTTCACGGAGAAAACCAACGAGATCCGCCGGGCCTACTGGCGGCCGGGGCCCAACACCGGCGGCCGCTTCTACTTTCTATATGGCTTCGTTTGGATCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047254:ENSBTAT00000065373:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.017
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCGTGGACATCTTCAAGGG
R:
CCTGGATCCAAACGAAGCCAT
Band lengths:
269-502
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development