BtaINT0011875 @ bosTau6
Intron Retention
Gene
ENSBTAG00000017704 | ABCG2
Description
Bos taurus ATP-binding cassette, sub-family G (WHITE), member 2 (ABCG2), mRNA. [Source:RefSeq mRNA;Acc:NM_001037478]
Coordinates
chr6:38027845-38030579:+
Coord C1 exon
chr6:38027845-38027927
Coord A exon
chr6:38027928-38030373
Coord C2 exon
chr6:38030374-38030579
Length
2446 bp
Sequences
Splice sites
5' ss Seq
CATGTAAGT
5' ss Score
8.31
3' ss Seq
CTTTTTCTGTTGAATTTCAGATG
3' ss Score
10.26
Exon sequences
Seq C1 exon
GCTTTGCAGCATAATGAATTTTTGGGACAAAACTTCTGCCCAGGACTCAATGTAACAACAAACAATACGTGTAGCTATGCCAT
Seq A exon
GTAAGTTTGCGTTCAGTGTCACAGTGGCTTTGCTTACTGTTGTGGTATGATACAGAAATACTACTGGGCTGAGGAATCCTTTCACAGACACTGACTTCTCTGAGTCTGAGTATTCTCATTTATAAAGTGAGTTATCCACTAATGCATGAGAAAGTGCTCTACAACTCCTGGGTATTCTATTTAGGTCAAAATTGTATTTTACTTGGAGAACCATTTCTTATGTGTTACTTATTTGTTTGGGGTCTTTTAAAAGATCCTTTTGCAGTTTGGATTGTGGGTTTGGATTTCTATTTTTCAGAACATTTGAGTTTGAAATGAGAGCTGCTTTGGTATTTTTATCAAGCCTTAACAGTACTGGAACTGTATGGATTATATGAAGTGTATAGACCCATGAATTTAGGATTCCTGTGAGCTCAACCCACGGCCAGGGTGAAAGAGTTAGTTGCTCAGTCGTGTCTGACTCTTTGTGATCTTATGGACTGTAGCCTGCCAGGTTTCTCTGTCCATGGAATTCTCTAGGCAAGAATACTGGAGTGGGTAGCCATTCACTTCTCCAGAGGATCTTTCTGACCCAGGGATCAAACCCAGGTTTCCTGCATTGCATGTGGATTCTTTACCATCTGAGCCACCAGGGAAACCCAACCCATGGCTAGTAGTAAGAGCTAAAACGGCATTAGGAGTGGGAGGGAACATTTTCCTGCCCCAGTCTGGCTCTTGCCTCTTCCTCCTGTATCCAGGAGACAACATGGAATCAAAGTCTGCACAACCTTTTTTTTTTTTTTGACTGACTTGGAATTCTCCCTACTGAAGGATGTTTCCTCTAAAGAAAGGAACATATATTTCAGTAAGCTTGAGAAGGGAATCTCATTTTTTTCAGTATAATAAGAAAAACAGATTTTAATAGAAATAAAGGCATTATTTTAAAGTTAAGTAACATTTCCTTTTGATGATTGTTGTTAATGGTTTGATTTTGATATATTAATTAATGAGAGAAAAGAGAATGCTGGTATCCTAAATCTCATGAATATTCAAGTGGGTTAGAAGTAATTCTTAATAATAGGACAAATTGCTATTTAGAAGTATTGCCAGAAAACCTCTATGAAGAGAAGCTTTCCTTATCCTGCCTACTCCCTTTCTTTTGATATGAGTATAACATTTTTTTTTTCAATCTGCTAAATTCCAAGAGTAGCAGAAAAATGGAATCAGGTAATAATTATGGTTGTGCCAGATATTTTTAATACCAGCTGCTTTTCTTTTATTTTTTTTAAAATTTAAATTTATTTATTTTAATTGGAGGCTAATTACTTTACAATATTGTATTGGTTTTGTCATACATCAACATGAATCCGCCACGGGTGTACATGTGTTCCCCATCCTGAACCCCACTAATCAGGGCTACTCCATCCTATTCTGCTCTGTTCCAGCTCCCACTAAGGCATACCTGATAATCTGACCTGCTGGTAATGTCTTAGAGCCGAGCCTCTGTGATGCTCATTCCAGTCTTGGTGTAAGAGCTGACAGAGTGTGACTCTGGTAGGAGACCTCTATTCACCTATTCCCCTAGTTTTAGAACTCTGAGCCTGTGTTTTTTCTTTTTTTTTGGTATGGCTGATTTGTGAGTAATGAGCCCTATAAACAGCTTTGGTCATCTTTGTAAGTGCCTTCAGTATCATCTGCTAAAGCTAAGACTTTCCCCATCAGGCATTTGTGAAAAATTACTTGATAAATGTTTCTGTCCTTTGAAGAGAGGCCGCATCACAGACTTGGAAACCAACCTATTTGGGGAGACTACCAACTTGATTCAAAGTGTGAATCTGTGAAGTTGACCAAGTTCCTTAAACTTTAGTCTCCTCATCTTTTAAATTTGGGTTGTTTTAGGGATTAATTAAACTATTATATGAGAGCTTCCCAGGTGGCACACACTGGTAAAGAATTCGCCCGCCAATTCAGGAGACACAAGAGATGCAGGTTTTATCCTTGGGTCAGGAAGATCCCCTGGAGAAAGAAATGGCAACCCACTCCAGTATTCTTGCCTGGGAAGTCCCATGGATAGAGGAGCCTGGGGGACTACAGTCCATGGGGTTGCAAAGAGTCAGACATGACTTAGCAACTAAACATATACATCCACAAACTATTATAAGCAGGTTGCTTCATAGTATCTAACAGAATTATAAGCACTCAATGACTGTTTTCTGTATATTTTTATGATGCATATGACTGACCTATGAACCCCTGTTATATCCCAATAGAATAGAACGATAAAGCTAAAACCACATGCACATACACACACCACAAAAACCCTCTAAAACTGTTTTCTATTATAAATGAAGGGATGGTAATTTAAGACTTGGTAACCTGTAGGTTTCTTTAAGGAACAGTGAATATATTGAGTAAAATTTGACAGATGCTAAAAATGAAGTTATATTCTTTTTCTGTTGAATTTCAG
Seq C2 exon
ATGTACTGGCGAAGAATTTCTGACCAACCAGGGCATCGATATCTCACCTTGGGGCCTGTGGAAGAATCACGTAGCCTTGGCATGCATGATTGTTATCTTCCTTACAATTGCCTACCTGAAATTGTTATTCCTTAAAAAATTTTCTTAAATTCCTCTTTAATTTCAGTGATTTACCCCCAATTAAAAAGGGACTTTTTGATTTTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017704:ENSBTAT00000055044:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0106119=ABC2_membrane=PD(2.8=21.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]