BtaINT0012124 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015026 | ABL2
Description
ABL proto-oncogene 2, non-receptor tyrosine kinase [Source:HGNC Symbol;Acc:HGNC:77]
Coordinates
chr16:61897894-61900432:-
Coord C1 exon
chr16:61900259-61900432
Coord A exon
chr16:61899716-61900258
Coord C2 exon
chr16:61897894-61899715
Length
543 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGA
5' ss Score
10.03
3' ss Seq
TATTATTTTTTTTAAATCAGGGT
3' ss Score
7.36
Exon sequences
Seq C1 exon
AGGTTGCTGAGGAGCTTGGGAGGGCCGCCGCCGCCTCGTCTGTGGTTCCATATCTGCCTCGACTGCCTCTGCTTCCTTCCAAGACCCGGACGCTGAAGAAGCAGGGGGAGAACAAGGAGAACATCGAGGGGGCACAAGATGCCACAGAAGATTCTGCTTCCAGTTCAGCACCAG
Seq A exon
GTACGAGTCCCTAGGAAGGTAGAGGCAGACTGCCTCGTTTAAAGAGCCATGGGCTATGAAGCTTTTATTTCCACTTTCCTGCCCGTCTTCCTCAAGGCAAAGGGTGGTGGGCATCTGTTTTATTTACCACTCTAGTCCACGGCTCTGCATTGCCAGTGTTAGTAGTCGTGATCTGTCCATTCGGCACACAACTCTGCCTCCCACTCCATTTCCTAAACTCTTGATTCTCAAATAGTTGCACTCCTTATGGTTCTGGCAAAAATTTCTTTCTGAGTCTGATAGGTGAAGCCAGGTTGTGCTGTAGTTGCTAGAGAAAAGATGGATGTTGAGGTAAAAACCAGCAGGTTTATTTCTTTGTATTTATATCTCACATCACATTTGGAACAGCAGTGTGACATGATAGTGTATTTATTAGTTTCCTCCGAGTGTCCTGCTAACACTTGACTCTTAATAGATGCCAACAACACTCTTCACTGTCTTCACTCAGGCGAGTCACTTACTTTTCACAATACTGATTGGCTGTTATTATTTTTTTTAAATCAG
Seq C2 exon
GGTTCATTAGAAGTGCACAGGCCCCCAGTGGGTCCCCAGCACTGCCTCGAAAGCAGAGAGACAAGTCACCCAGCAGCCTCTTGGAAGATGCCAAAGAGACATGCTTCACCAGAGATAGGAAGGGAGGCTTCTTCAGCTCCTTTATGAAAAAGAGAAACGCTCCCACACCCCCCAAACGCAGCAGCTCCTTCCGAGAAATGGAGAACCAGCCCCACAAGAAATACGAACTGACGGGTAACTTCTCATCTGTTGCTTCTCTGCAGCATGCTGAAGGGTTCTCTCTCACTCCTGCCCAGCAAGAAGCGAGTCTGGTGCCACCCAAGTGCTATGGGGGTAGCTTTGCACAGAGGAACCTCTGTAATGACGACGGTGGCGGGGGTGGGGGCAGCGGTGCTGCTGGGGGCGGGTGGTCTGGCATCACAGGCTTCTTTACACCACGCTTAATCAAAAAGACGCTGGGCTTACGAGCAGGTAAACCCACAGCCAGTGATGACACATCCAAGCCTTTTCCAAGGTCAAACTCTACATCTTCCGTGTCCTCAGGGCTTCCAGAGCAGGATAGGATGGCAATGACCCTTCCCAGGAACTGCCAGAGGTCCAAACTCCAGCTGGAAAGGACAGTGTCCACCTCTTCTCAGCCAGAAGAGAATGTGGACAGGGCCAATGACACGCTTCCAAAAAAATCAGAGGAAGGTGCCGCTCCGACCAGGGAGAGACCAAAAGCCAAACTTCTGCCCAGAGGAGGCACCGCTCTTCCTCTCAGAACCCCCTCTGGGGATCCAGCCACTACAGAGAAGGATTCTCCAGGGTTGGGGGTGGCTGGAGTGGCAGCTGCCCCCAAGAGCAAGGAGAGGAATGGTGGGGCACGACTTGGCATGGCTGGAGTCCCAGAGGATGGCGAGCAGACCGGCTGGGCTTCTCCAGCCAAGACTGCCGCGGTCCTCCCAACCACTCATAACCACAAAGTGCCCGTCCTTATCTCACCCACTCTGAAGCACACTCCAGCTGACGTGCAGCTCATTGGCACAGACTCTCAGGGGAATAAATTCAAGCTCTTATCAGAGCATCAGGTCACTTCCTCTGGAGACAAGGACCGACCCCGCCGGGTAAAACCAAAGTGTGCCCCGCCCCCACCACCAGTGATGAGACTACTGCAGCATCCGTCCGTGTGCTCAGACTCCACGGAAGAGCCAGCCGCCCCGACTGCAGTCCAGCCCAAGTCAGAAACACAGGAGGGAGGGAAAAAGGCGGCTCCAGGGGCGGTGCCCACCAGTGGGAAAGCTGGGAGGCCTGTGATGCCTCCACCTCAAGTGCCTCTGCCCACATCTTCCGGCTCGCCAGCCAAAATGGCCAATGGCACAGCAGGTACTAAAGTGGCTCTGAGAAAAACCAAACAGGCGGCCGAGAAAATCTCAGCCGACAAAATCAGCAAGGAGGCCCTGCTGGAATGTGCCGACCTACTGTCCAGTGCCATCACGGAACCTGTGCCCAACAGCCAGCTGGTGGACACTGGCCACCAGCTGCTCGACTACTGCTCAGGCTACGTGGACTGCATCCCTCAAACTCGCAACAAATTTGCCTTCCGAGAGGCTGTGAGCAAACTGGAACTCAGCCTGCAGGAGCTGCAGGTGTCTTCTGCAGCCGCTGGCGTGCCCGGGGCAAACCCTGTCCTTAACAACTTACTGTCATGTGTACAGGAAATCAGTGATGTGGTGCAGAGGTAGCCACTGGAAGCCAAGTGGGAACATGCACACATTTCTGAGGGGAGAGGGAAAGGGACTTGTTTTACTTGTGTTCTCGTTTCAGAAAATGGAAGACTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015026:ENSBTAT00000020006:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.576 A=NA C2=0.746
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF089195=F_actin_bind=WD(100=18.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGGAGAACATCGAGGGGG
R:
GCAGGAGTGAGAGAGAACCCT
Band lengths:
355-898
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development