BtaINT0012201 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012525 | ABO
Description
ABO blood group (transferase A, alpha 1-3-N-acetylgalactosaminyltransferase; transferase B, alpha 1-3-galactosyltransferase) [Source:HGNC Symbol;Acc:HGNC:79]
Coordinates
chr11:104238484-104241784:-
Coord C1 exon
chr11:104241749-104241784
Coord A exon
chr11:104238613-104241748
Coord C2 exon
chr11:104238484-104238612
Length
3136 bp
Sequences
Splice sites
5' ss Seq
CTTGTAAGT
5' ss Score
8
3' ss Seq
GCTGTGACTCATCTCCCCAGGAG
3' ss Score
8.33
Exon sequences
Seq C1 exon
GTTGCTTTACCCCAAGGCTCAGCTGCTCAAGCCCTT
Seq A exon
GTAAGTAGACGGAGTTTCTGCCGTGGCTGCGACCAGTGGGTTCCCTGCCACCACTACCTTATGGTTGCCTTCTCTCGCTTCACTGCCTGGTTTCAGCCTTTCTTTTGCCCTTTTCCTTTCCTTCCTGTCTGGGCTATGGGAGGCTGGGCTAGTTTTCAGTGGGTTTGGTACACACTGAAGGACCAATGGAAGGTGCCTCTAATTTGTGGTCACCAGGAGCTGTGCAGAGGTCCGCACCAGGCATGGAAGCTTCTCTTGTTTCTTCTCGGGGAAGGAAGTTGGGGTCTGGGCTGGGTTATCCCTGAGGCCTTTCCATGACCATCAGTGTCTGAGGGCTTATGGTTCCAGCTTGCCTTCACATGCAAGTATCTGTCTCCTAATCCGGGCCTCCTTGCCTGTGCCCACACCTCCTGCTTCCACTGCCCGAGAGAGTGCTGGCAGCCTGTCACTGAGGCACTAGATCCCCGAGCTTCGGGACAGGAAGTCGCCCAGAGACCACTTTGATCAGCCCCGTTTTATGGGCAGGGAAACTGAGGCTCAGAGAAGTGAAGGAGGTTGCTTGAGGCCCCTCGGCTGGAGAAGGACAGGTCAGGACGCAAGCTGAGTGGCCTCTGTTACATCCTGCCACATCCCTGCCAGGGGACCTGGAGGTGCTCACTGTCATTTCTGGAAACCACATACACACCTCCTTGAACTTCCAGAGCCGCCAGCCACGTGTGGCCTTGAACGCTTGAAACAGGACTGCTCTAGGAGGAGCTGTGCTGTCTGCGTGGGGTGCACGGTGGACTCCACTTAGTACATGAAAAGTGTACCAGGAGCTTGGGATTAACATAGACACACTGCTGTATATAAGACAGGTGAACAACAGGACCCACTGAATGGCCCAGGGACTCTACTCGATATCTTGTCATATCCTATATGGGAAAAGAACTTGAAAAAGAATATATATGTATAGAGGCACACCTGAACCACTTTGCTGTACATTTGAAACTAACACAGCATTGTCAATTAACTATATACTTCAATAAATGTATCAATTACGTACTGAAATGATAATATTTTGGATATGTTGGGTTGAACAAAGTCTATCATATTAACAGTCATTTTGCTTGGTTCCATTTACTTTTCTGTGATTCCCAGACAATTTTTAGTGGCATACCTTTCCGGAGGTCAGCACACATCTGGAGGGGCAGGTGGGCATGAACTTTTTTGGTGGGTCCTGGCGGGGTGATGAACGAGTGAATGAACACTCGTGAAATAAGAGTCAGGGGAAGGTGAAAGGGGTCCATGCCGGCTGGAGAATGGAGAAGGGGCAGAGATCACAGGACACGAAGAGCCCCTGCGAGGGGAGGGGGCTTGAAACTCAGCTCTGCCTCTGAAAGAAAACCTTGTTCTGTCTGCTCACAGCAAACATGTGGTTACCCACACCAGGTGATTCTGATACTCCCTGCAGTCAGCACAGACGCCGCAGGTGGACAGTCAGTTTCACAGCCTGCCCACACTCAGACCCTTGTCGCAAGTTCCATATTGTCATCTAAGCTTTGACCAACGGGCTATAAATCATTGCTCACCACCCGCTCCTTGGGTTTGCTGGTTTGCTGGGATGCCCCCAGAACTCAAGAAGACTTTACTTACTAGATTCTTGGCTTGTTATAAAGGATGCAGCTCAGAGACAGTCAGACTAAGAGGTAAATAGGGCAGGAGGGGGAAGGGACGGGGCGCCCAAGCCCTCCCCAGAGCACCTCCCTCCCAGCACCTCCCTGTGTTCACCAACCTGGAAGCACTCTGAACTCCACAGCTAAGGGATATTTATGGAGGCTTCATCTCGCTGGCATGATTGATTGTTAACTTGACCTCCAGTCCCTCTCCCTTCCCAGAAGGAAGGGATCATCAGTTCGGTTCAGTGCAGTCGCTCAGTCGTGTCCGACTCTTTGCGACCCCATGGACTGCAGCACGCCAGGCCTCCCTGTCCATCACCAACTCCCAGAGTTTACTCAAATTCATGTCCATTGAGTTGATGATGCCATCCAACCAACTCATCCTCTGTCGTCACCTTCTCTTCCTGCCTTGACTCTTTCCCAGCCTCAGGGTCTTTTCAAATGAGTCAGTTCTTTGCATCAGGTGGCCAAAGTATTGGAGTTTCAGCTTCAACATCAGTCCTTCCAATGAATATTCAGGGTTGATTTCCTTTAGGATAGACTAGTTGGACCTCCTTACAGTCCGAGGGACTCTCAAGAGTCTTCTCCAACACCACAGTTCAAAGGCATCAATTCTTTAGCACTCAGCTTTCTTTATAGTCCAACTCTCACATCCATGCATGACCACTGGAAAAACCATAGCCTTGACTAGATGGACCTCTGTTGGCAAAGTAATGTCTCTGCTTTTGAATATGCTATCTAGGTTGGTCATAACTTTCCTTCCAAGGAGTAAGCGTCTTTTAATTTCATGGCTGCAGTCATCATCTGCAGTGATTTTGGAGCCCCCCAAAAATAAAGTCTGTCACTGTTTCCACCGTTTCTCCATCTATTTGCCGTGAAGTGATGGGACCAGATGCCGTGATCTTTGTTTTCTGAATGTTGAGCTTAGGAAGGGATGTGAGGCAGAAAGTTCTAAGTTCCAAGTTTCTAATCCTGGCTTGGTCTTTCTGGTGACCAGCCCCTATCCTGAACTACCCCCAAGCCCACCTGGAGTCACCTCATCAGACCAAAAGATGCTCCTACAATCCAGGACCTCCCAAGGGTCCTAGAAGCCTAGTGCAGGTAAAGGGAGGGCTGTGGCAGAGACCAAATGTCTGTTTCTTGTTATGGCAATGTTCTCACGTGCTGAGAGAGGGCTTAGTGCTTGCCCTCCCTCGAGACTGTGCTCCTCCTGGAAACAAGGGGCCTCACAAAAGGATGTTTCAGGGGTTCTAGCACATGGCTGGTACTCCGGAGATACTCTGAGTTACGGCAGTGAAGGGATGGAAGTGTTGAGTCCTCGGTGCTGAGCTTATGCTGCCAAAAGCACTGGGTTGGGAATCCAGAGTCCTGTCTGCTCCTAGCTCTGCAGCTCATGGACTGTGCAGCTTTGGACAAATCCTTCTCTATGGCCCACACCCCCATGACCTGCTCGCGTGTGCTGTGACTCATCTCCCCAG
Seq C2 exon
GAGAGTGGACGTGCTGGTCATGACCCCCTGGTTTGCTCCCGTCGTCTGGGACGGGACCTTCGACTCTGCCCTCTTGGATGTGCAATTCAGAAACACCACCATTGGGCTGACCGTGTTCGCCATCAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012525:ENSBTAT00000042758:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF034148=Glyco_transf_6=FE(3.6=100)
A:
NA
C2:
PF034148=Glyco_transf_6=FE(12.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development