BtaINT0012514 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016158 | ACAN
Description
aggrecan [Source:HGNC Symbol;Acc:HGNC:319]
Coordinates
chr21:20829104-20831834:+
Coord C1 exon
chr21:20829104-20829180
Coord A exon
chr21:20829181-20831450
Coord C2 exon
chr21:20831451-20831834
Length
2270 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
CCCCATGTCTCCCTGCACAGAAC
3' ss Score
8.74
Exon sequences
Seq C1 exon
GTGAACTATGACCACTTTACTCTTGGTGTTTGTGACTCTGAGGGTCATCACAGCAGCCATCTCAGTAGAAGTTTCAG
Seq A exon
GTGAGGACATCCCCGTGTGTCTCATTTACCTGGCAGGCACTGAGGACTGGACTCGGGGGTTGGAGACCAAGCCTGGCACTGATAGTCCTGGTGCTTGATCTGGGCCATCACTTTAGAGGCCCCCCTCTCTGACTCTCCCACAGCCCCAACATTCCCTAAAAGTAAGGAATTGTAGGGCCAGTGATATGTGTCCACCCTGCTCTATTCTCCCTCTGGGTACCCAGGACGCCCAGAATTCCCTGTCCAGCTGGACCCAAGTCATTTCCAGGGCTGCATGGTTTGCTCCTCTGGGTCCATCCTTCCATGAAAGGACCACCCACCATCACCAATCTGAGCCACCAGAAGGCCAGTGGGAGAGGTGAAGGGGTGGCTGTTCGGGTGTGGACAGAGCTGGGTTGTGAGGGCCTGGATAAATACAGACCCTTCACAGTGCAGAGCTGTGAGGGAAGAAAAGGGGTCCTGATTCCCTCTCCTCCAGCGTGGCCACCACATTCCAATGCAAAACTCTAAGGGATCCAAGAATTCTAAATTTGAATCTGGTTTTTCATTTTGAAAGGTATCATTGTCAAATAAGAAGATAGAACAATTTTTAAAATAATTTATTGGTCTATTGGCTTGATGTATAGCTTTTAAATATTTAGACATATGATCCATGAGTCTCCACTTGTACTCTTTCCCTGAGACCCTTGAATACCCAGCTGGCTATACCCTGGGGTGATTTGCCCACACAGGCCAACCATTTCATGAGGGTTGGTTGAGAGCTTTAAAAACTGCAGAGCTGGGTGCTGCTGTCACTTCCAGTTGTCCCTGGAGAACCGTGTGTGCGTGATCAGTCAGTGCAGTATTGTCTGACTCTTTGTGACCCCATGGACTGTAGCCCACCAGGTTCCTCTGTCCATAGGATTCTCTAGGCAAGAATACTGGAGTGGATTGCCACACACGCCTTCAGAGGATCTTCCTGACCCAGGGACTGAACCTGAGTCTCTTATGTCTCCTGCATCGGCAGGTGGGTTCTTTACCACTAGTGCCACCTGGGAGGAACCTGCCCTGGAGAGCTACCACCACTAAAACCATGCTGTGTCCTGTGCTAGGGCGGAGCCTCAGAGGGATATTTCTGTGAAGGGCCTGCTAGTGACCCCCCAGGATATCAAAAGGTTAGGGCTGGACCCCAAACATTCCTGGCTCCCTCTTTCTTGCCTTGCTATGTATCTGCCACTCACAAATATCTGAAACATTTTTATGGTCAACCTGCAGGCTCTCCTGGAAAAAAAAGTTCAATAAGTGTATGACTGTTCATAAAAGTGCTGTTTTTTCAAAGGCTCTTTCTTTCCAATACCAGGAAGATTTTTGACTTCTAACAGAATTTGCAAACTCTCTGCATCTTCCCTATCAATACCATCTAGGTTTGTTGTTGTTGTTTTTTTTTAATGGAGTCTAATCATATCCCAACCCACCCCAGGCTGACTCTTTGCAGACTTAAACGTCTGATCTTCTCTGATGCCTCTCCAACTAGGCCCCTGAGCCCCCAACAACAGAACAGAATGACTAGTCCTTCTGCAAGGTCAGGATGGAGCCCAAAGCAGACCTCCTTAAGTGTTTGATATTTTTATATCTTAGCTTTACAAGTTGTATAAATTTTTTCTTCCCCATAGTAATTTTTTCTTGATGTTGTTCAGTCACTAAGTCATGTCCGACTCTTTGCTACCCTATGGACTGCAGCATGCCAGGCTTCTCTGTTCTTCACTATCTACCAGAGTTTGCTCAGACTCATGTCCATTGAGTTGGTGATGCCATCCAACCATCTCAACCTCTGTCATCCCCTTCTCCTCCTGCCTTCAGTCTTTCCCAGCATCAGGGTCTTTTCCAGTGAGTCAGCTCTTCACATCAGGTGGCCAAAGTATTGGAGCTTCTCCCCCAAAGTAACTTTTTACCAATTTTTGAGTCAAGCTGTCACTCCAGAAAGATGGGTTCTGTTTATCCCATGGCTTGGCATCACCTAGGGTACCCCAGTTTGAGAAACAAAGAGGTACACCTGTGAATTTCCCAATGGCCTCCTCTGCAATCCTTTCTGGCTCCATAGTTCCCATCTTGAGGCACAGAGACCAGGGGGTCTTGAGGAAGCTGCTCTGGAAAGGGAATTCCATATGACACAGGAGGCTTCCCCAGCACCAGCACAGACATTGTCATTTCCAGAAGGACTGACAGAGAGGCTGGGTGGTCCTCTCTGGGCACTAACGGCTCTGTCTCCCGCCCCATGTCTCCCTGCACAG
Seq C2 exon
AACCTGACAACTCGCTGAGTGTCAGCATCCCTGAACCGTCCCCGCTGCGGGTCCTCCTGGGGAGCTCCCTCACCATCCCCTGCTACTTCATCGACCCCATGCACCCCGTGACCACCGCCCCCTCCACCGCCCCCCTTGCCCCAAGAATCAAGTGGAGCCGCATTTCCAAGGAGAAGGAGGTGGTGCTGCTGGTGGCCACTGAAGGGCGGGTGCGGGTCAACAGCGCCTACCAAGACAAGGTCACGCTGCCCAACTACCCCGCCATCCCCAGCGACGCCACCCTGGAAATCCAGAACATGCGCTCCAATGACTCCGGGATCTATCGCTGCGAGGTGATGCACGGCATCGAGGACAGCCAGGCCACCCTAGAGGTCGTGGTAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016158:ENSBTAT00000021512:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.008
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0768612=V-set=WD(100=96.1),PF0019312=Xlink=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]