BtaINT0013147 @ bosTau6
Intron Retention
Gene
ENSBTAG00000001417 | ACSM1
Description
acyl-CoA synthetase medium-chain family member 1 [Source:HGNC Symbol;Acc:HGNC:18049]
Coordinates
chr25:18393149-18396420:+
Coord C1 exon
chr25:18393149-18393359
Coord A exon
chr25:18393360-18396212
Coord C2 exon
chr25:18396213-18396420
Length
2853 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
AGTTTCCTTCCCATACCTAGGGA
3' ss Score
6.94
Exon sequences
Seq C1 exon
GAGGGCAAGAGAAGTCCAAACCCAGCCCTGTGGTGGGTGAACGATCAAGGGGATGAAGTGAAGTGGAGCTTCAGAGAGATGACAGACTTAACCTGTCGCACAGCCAACGTCCTGACACAGACCTGCGGCCTTCAGACGGGAGACCGTCTAGCGTTGATTTTGCCTCGAGTGCCTGAGTGGTGGCTTGTGTGTGTGGGCTGCATCCGAACAG
Seq A exon
GTCAGTGACCCAAAGAGACCTTAGGACAGGCCTAGAGCTAATTGGTCCTGAAATATTAGGTGCTTCCTCTTCCCCTAACTTTTTTCTTCTTAATAGTCTTTCCTTCTGTCAAATTCCTTTAAATACTAGTTTACTCCTCATTCACTCTTTCCCTTATACTCACACCTTATCAAGCACAGTGTCGTAATTCTGCCTTCTTCCCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACACACACACACTTTATCTTACACAGTCTCAGACATTCTTACTTCCTTATAAGATTCATCAGTTATTAACATTTTGCCATATTGGATCCCCTCTCTCCAAGGGAGTCATTAAAGAATCAGTTGCAGACACTGTGACACCCATAAACACCAGATAAACACTGAAATATGTATCTGCTAAGATTCGAGACATTTCTTTCACATAACCGCACAAGAAGTCTCACTCTGATTCAATATAGTTACCTGATGTACATCCAGAGTCAAAATTCCTCAATTATCCCAATAATGTCCTTTATAGGATTATTTTTGTGCTTAAATCAAAAACCCAGGGTTTTTCCTGGCAGTCCAATGGTTAAGATCCCATGCTTCCAATGCAGGGGTCATGGCTTCAAGGAACCAAGATCCCATGTGCCACACCGCACAGCCAACTGTTTTTTTTTTTTTTAAACAACTGTACAAAATCCAAATGAGGATCATGTGTTGCATTTAGTTGTTGTCTCACCACAGCCTTCTTTAATATAGAATGTTTCTCTACATACTATATTGTCTGTGTGACAATGCAATGACAGTTTGAAGTGCCTAAGCCAGATGTGTTACAGAATATCCCTCAAAATTTGTATTTCTGTTTCCTTCTTTATGATTATATTCAGGATGAACATTCTTTGCACAAGTACTAGAAGGACTTGTGTCTTTCTTGGTGTACCACATTGGGGATATATACAGTTGGTTTGTCCTAACATCAATGACATTGTTTTATCACTTTAGAAAGGTAGCATCCACCTTTGTAAAGGTGCATTTTCCCTTTGTAGTTAGTAAGTAATCTGTCATGTAATATTATGGGACTTTGTGAATATCCTTTCCCCAACTGTCTTTCAGTTTATGATTTGAAAATTCATTGATGAGTCTTGACTGAATTAAATATTTTAATGGTAGTTTTATATTAGGTATTTCTATTTATATCATACCCTTTACACTTATTAGCCAGCACTCTTGTGTAGAGATTTTCCTTTCCCTTTAATGCTTGTCTATGCATTGACCTATATAATTAGTATGAGATTCATGGATTCTTTTTTGAATCAACTTCAGTTCTGTCATGCATATTCATACAGTATGTCATGTTCTTGTTCATATATTCTCTCTCTTATCTCCTCGCAAATAGTTGTTTAATCCATCAAGATCAAGAATTAACAGCAATGGCTGAGTGCATATGGAGATGCCATGCCATCTGTATCATTAAGAGATGTTCCATGATTTATATCTGATCCTGTTCACACTGTCCACACTGTTCCTTGAACCTAGGGTAGGCAAGGCACAAGCTAAGGCTGGAAGGAGACTGGAGGAGCCATAGGAACTGCAGCCACGTTTATTCTCTCCTGGCTGACGCAGCAGCCATAGCATAACCTAACACAACACAACCTCTCTCCTGCCTGGCACAGCAGCTGTAGCAGCAGACACACTTATTTTCTCTCCTCTCATGGCTGACCCAGCTGGACACAGCTGTGATCCAGCAGTAAAGCTGCTGCTTTTTAGGTGGAGTTCCTATCTGCACATAGCACTGAATCCCTGACCAAACGGGTGCCTCGTGATGCACATGTGCCATGCTATGAGTGATCTCAGCTGCTACACAGTCATTATTTACAAAACGTGGGGCAAGAGAGCCTGAACACACCATCTTGGATAATTTGGTCTCTCCCCACCCATGAGAAATCCAAGACACATGAGAAATCCAAGACATGAGTTGAGACCTCTGGGATAAAAAGAATTAAAGAAGAATAGAAGTAAAGGATGAAAATTCTAAGAGGCATAGTACATGAAAATACTTAAGAGTCAGGAGTAGCCTAGATGAAGAATGGTCATTTTGAAATAGAGAATAGAGTTGTGTGACAGAAAGGTGAAGCGTGAGCAGTGCTCACTCCAATGTCAGGATGACGCCAAGAGGGTCTTCCTGGAGAGAGGGCACAGGTGTTAGCAAAGAGAAGAACTGTGAAGGAGAAAAAGTCAGTGCTCTGTGGAACATAAACAGGCTAGTAATACGGAAGGTGAGTAATAGGAAAACTCAGAAAAGTGCGCCTGATGGAAAAATTAGAATCCAATAGAAGCACACAAAAGTTGAATTAATTGTTGGTGATGGGAGAAGGAAGGTAGGAAAGTTGAAAGGACAGTGTGGGTAACTTAGGGTATGAGGAACGAAGGAAACAGAAGAAATTCAAGGTGACACAAGAGATGTTCAGAGAAGAAAGTGAGAGGAGAAAAAATGGGGGCAGAGATGCAGCATCAGGGACACTGTCCTACTTGTGTCTTTCCCAGATCCCATGGGTAGTTGTGTCAAGAAGGACTCTACTGGCTAGATCCATCTACAGTAGAAAAGTTTAGGATAGGCTTTTCAAATTTTTAATGTGCATAGAAACCACTTGGAGATCTTGTTAAAATGCAGATTCTGAGTCAGTAAGTTTGGGGTGGGGTGTCAGATTCTGTGCCCTAGGTAGTACTGATGCTCTGGACCATACTTTGCATAACAGAGGCCAGCGGATTTCTATGCAGATAAACCAGGCCTGAAGCCCAGGGTTGTGAAGCTGTGAAAGCGAAACAAAAACAAGCAGTTTCCTTCCCATACCTAG
Seq C2 exon
GGATCATCTTCATGCCAGGGACCACCCAGATGAAGGCCAAGGACATTCTCTACCGACTACAAGTGTCTGGAGCCAAAGCCATCGTGACCACAGATACCCTTGCCCCAGAGGTGGAGTCTGTGGCACCTGAGTGTCCTTCTCTGAAAACCAAGCTCCTGGTGTCTGACCACAGCCGTGAAGGGTGGCTGGACTTCCGATCACTGGTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001417:ENSBTAT00000001859:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(16.9=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(16.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]