BtaINT0013169 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006447 | ACSM3
Description
acyl-CoA synthetase medium-chain family member 3 [Source:HGNC Symbol;Acc:HGNC:10522]
Coordinates
chr25:18655754-18656582:+
Coord C1 exon
chr25:18655754-18655873
Coord A exon
chr25:18655874-18656270
Coord C2 exon
chr25:18656271-18656582
Length
397 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
3' ss Seq
CTTCCCTTGGATATCTACAGGTA
3' ss Score
8.39
Exon sequences
Seq C1 exon
GTAGTAAAGGCTTTTATTGTTCTGAATCCTGATTACAAGTCACATGATCAAGAACAACTAAAAAAGGAGATTCAGGAGCATGTAAAAAGAAATACAGCACCTTACAAATATCCCAGAAAG
Seq A exon
GTAGGTACTCTAATTAAGAACAATATTTGCTTAGTATTCTGGAAATTTTTAGCTGTTTATTTTTTCCATTTTAATGAACATTCTCTTGAAATGTGCTATACCAAACATTTCAAACTGAACTAATGACATGGATAAGAAACAGAATCTTTGAGATTAAAGTGAAACTCTTAACCTAATTTGTAGGATCATTTGGCTTACTGGACTTATAGTAAATACTAAATATCACAAAAAATATCCTCAACAATATCCATTCTCCCTTTTTTGGCTTTTATCAAAAAAACCTCCCAATTGGTGTCCTGATTCTTTCACCTAGAGTTCATAATAGAACTGTTACATAATTGACTTTGTCTAAAGATGAAAACTTCTGGCCTAATTTTCTTCCCTTGGATATCTACAG
Seq C2 exon
GTAGAATTTATTCAGGAGCTGCCAAAGACTATTAGTGGGAAGATAAAAAGAAACGAACTGAGGAAGAAAGAATGGGAAACAATTTAAGTCTATTCCAGTAATTATGATGGTCTCTAAAAAATAAGACTCTGTAAAATCAAAGATTATGAAACGGTGGTAAAAAATGTGATAGTATGCTTATGAACTAATTGATTTAAAATAGCCTGTGGTTATAAGCTCACAGGCTGGATTCTGAAATAAAACATTCAATAAATTCCTCTGCATCAGTGTCAATGTTTTTAAAATTTGGTAATATAAAAAGAATATCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006447:ENSBTAT00000008455:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF131931=AMP-binding_C=FE(48.1=100)
A:
NA
C2:
PF131931=AMP-binding_C=PD(16.0=44.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCTTTTATTGTTCTGAATCCTGA
R:
TCAGAATCCAGCCTGTGAGCT
Band lengths:
348-745
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]